Package psidev.psi.mi.jami.xml.io.parser

Class FullXmlEvidenceParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser<InteractionEvidence>

psidev.psi.mi.jami.xml.io.parser.FullXmlEvidenceParser

All Implemented Interfaces:

FullPsiXmlParser<InteractionEvidence>, PsiXmlParser<InteractionEvidence>

public class FullXmlEvidenceParser
extends AbstractFullPsiXmlParser<InteractionEvidence>

Full Parser generating interaction evidence objects and loading all experimental details. It will load the all entrySet so is consuming a lot of memory in case of large files but is very performant for small files

Since:

08/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullXmlEvidenceParser(File file)	Constructor for FullXmlEvidenceParser.
FullXmlEvidenceParser(InputStream inputStream)	Constructor for FullXmlEvidenceParser.
FullXmlEvidenceParser(Reader reader)	Constructor for FullXmlEvidenceParser.
FullXmlEvidenceParser(URL url)	Constructor for FullXmlEvidenceParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser

close, createPsiXmlExceptionFrom, getEntrySet, getInteractorFactory, getListener, getVersion, hasFinished, parseEntrySet, parseNextInteraction, reInit, setCacheOfObjects, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FullXmlEvidenceParser

public FullXmlEvidenceParser(File file)
                      throws javax.xml.bind.JAXBException,
                             FileNotFoundException

Constructor for FullXmlEvidenceParser.

Parameters:

file - a File object.

Throws:

javax.xml.bind.JAXBException - if any.

FileNotFoundException - if any.

FullXmlEvidenceParser

public FullXmlEvidenceParser(InputStream inputStream)
                      throws javax.xml.bind.JAXBException

Constructor for FullXmlEvidenceParser.

Parameters:

inputStream - a InputStream object.

Throws:

javax.xml.bind.JAXBException - if any.

FullXmlEvidenceParser

public FullXmlEvidenceParser(URL url)
                      throws IOException,
                             javax.xml.bind.JAXBException

Constructor for FullXmlEvidenceParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

javax.xml.bind.JAXBException - if any.

FullXmlEvidenceParser

public FullXmlEvidenceParser(Reader reader)
                      throws javax.xml.bind.JAXBException

Constructor for FullXmlEvidenceParser.

Parameters:

reader - a Reader object.

Throws:

javax.xml.bind.JAXBException - if any.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractFullPsiXmlParser<InteractionEvidence>

Returns:

a Unmarshaller object.

Throws:

javax.xml.bind.JAXBException - if any.