Package psidev.psi.mi.jami.xml.io.parser

Class FullXmlParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser<Interaction>

psidev.psi.mi.jami.xml.io.parser.FullXmlParser

All Implemented Interfaces:

FullPsiXmlParser<Interaction>, PsiXmlParser<Interaction>

public class FullXmlParser
extends AbstractFullPsiXmlParser<Interaction>

Full Parser generating interaction objects that could be a mix or abstract interactions and interaction evidences. It will load the all entrySet so is consuming a lot of memory in case of large files but is very performant for small files

Since:

08/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullXmlParser(File file)	Constructor for FullXmlParser.
FullXmlParser(InputStream inputStream)	Constructor for FullXmlParser.
FullXmlParser(Reader reader)	Constructor for FullXmlParser.
FullXmlParser(URL url)	Constructor for FullXmlParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser

close, createPsiXmlExceptionFrom, getEntrySet, getInteractorFactory, getListener, getVersion, hasFinished, parseEntrySet, parseNextInteraction, reInit, setCacheOfObjects, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FullXmlParser

public FullXmlParser(File file)
              throws javax.xml.bind.JAXBException,
                     FileNotFoundException

Constructor for FullXmlParser.

Parameters:

file - a File object.

Throws:

javax.xml.bind.JAXBException - if any.

FileNotFoundException - if any.

FullXmlParser

public FullXmlParser(InputStream inputStream)
              throws javax.xml.bind.JAXBException

Constructor for FullXmlParser.

Parameters:

inputStream - a InputStream object.

Throws:

javax.xml.bind.JAXBException - if any.

FullXmlParser

public FullXmlParser(URL url)
              throws IOException,
                     javax.xml.bind.JAXBException

Constructor for FullXmlParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

javax.xml.bind.JAXBException - if any.

FullXmlParser

public FullXmlParser(Reader reader)
              throws javax.xml.bind.JAXBException

Constructor for FullXmlParser.

Parameters:

reader - a Reader object.

Throws:

javax.xml.bind.JAXBException - if any.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractFullPsiXmlParser<Interaction>

Returns:

a Unmarshaller object.

Throws:

javax.xml.bind.JAXBException - if any.