Package psidev.psi.mi.jami.xml.io.parser

Class LightFullXmlParser

java.lang.Object

psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser<Interaction>

psidev.psi.mi.jami.xml.io.parser.LightFullXmlParser

All Implemented Interfaces:

FullPsiXmlParser<Interaction>, PsiXmlParser<Interaction>

public class LightFullXmlParser
extends AbstractFullPsiXmlParser<Interaction>

Full Parser generating basic interaction objects and ignore experimental details. It will load the all entrySet so is consuming a lot of memory in case of large files but is very performant for small files

Since:

08/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
LightFullXmlParser(File file)	Constructor for LightFullXmlParser.
LightFullXmlParser(InputStream inputStream)	Constructor for LightFullXmlParser.
LightFullXmlParser(Reader reader)	Constructor for LightFullXmlParser.
LightFullXmlParser(URL url)	Constructor for LightFullXmlParser.

Method Summary

Modifier and Type	Method	Description
protected javax.xml.bind.Unmarshaller	createJAXBUnmarshaller()	createJAXBUnmarshaller.

Methods inherited from class psidev.psi.mi.jami.xml.io.parser.AbstractFullPsiXmlParser

close, createPsiXmlExceptionFrom, getEntrySet, getInteractorFactory, getListener, getVersion, hasFinished, parseEntrySet, parseNextInteraction, reInit, setCacheOfObjects, setInteractorFactory, setListener

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

LightFullXmlParser

public LightFullXmlParser(File file)
                   throws javax.xml.bind.JAXBException,
                          FileNotFoundException

Constructor for LightFullXmlParser.

Parameters:

file - a File object.

Throws:

javax.xml.bind.JAXBException - if any.

FileNotFoundException - if any.

LightFullXmlParser

public LightFullXmlParser(InputStream inputStream)
                   throws javax.xml.bind.JAXBException

Constructor for LightFullXmlParser.

Parameters:

inputStream - a InputStream object.

Throws:

javax.xml.bind.JAXBException - if any.

LightFullXmlParser

public LightFullXmlParser(URL url)
                   throws IOException,
                          javax.xml.bind.JAXBException

Constructor for LightFullXmlParser.

Parameters:

url - a URL object.

Throws:

IOException - if any.

javax.xml.bind.JAXBException - if any.

LightFullXmlParser

public LightFullXmlParser(Reader reader)
                   throws javax.xml.bind.JAXBException

Constructor for LightFullXmlParser.

Parameters:

reader - a Reader object.

Throws:

javax.xml.bind.JAXBException - if any.

Method Detail

createJAXBUnmarshaller

protected javax.xml.bind.Unmarshaller createJAXBUnmarshaller()
                                                      throws javax.xml.bind.JAXBException

createJAXBUnmarshaller.

Specified by:

createJAXBUnmarshaller in class AbstractFullPsiXmlParser<Interaction>

Returns:

a Unmarshaller object.

Throws:

javax.xml.bind.JAXBException - if any.