Package psidev.psi.mi.jami.xml.io.writer.compact

Class CompactXmlNamedModelledWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<ModelledInteraction>

psidev.psi.mi.jami.xml.io.writer.compact.CompactXmlNamedModelledWriter

All Implemented Interfaces:

InteractionWriter<ModelledInteraction>

public class CompactXmlNamedModelledWriter
extends AbstractCompactXmlWriter<ModelledInteraction>

Compact PSI-XML writer for named abstract interactions (no experimental evidences). Participants, features, experiments also have expanded names

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlNamedModelledWriter(PsiXmlVersion version)	Constructor for CompactXmlNamedModelledWriter.
CompactXmlNamedModelledWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlNamedModelledWriter.
CompactXmlNamedModelledWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlNamedModelledWriter.
CompactXmlNamedModelledWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlNamedModelledWriter.
CompactXmlNamedModelledWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for CompactXmlNamedModelledWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(ModelledInteraction interaction)	registerAvailabilities.
protected void	registerExperiment(ModelledInteraction interaction)	registerExperiment.
protected void	registerInteractionProperties()	registerInteractionProperties.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlNamedModelledWriter

public CompactXmlNamedModelledWriter(PsiXmlVersion version)

Constructor for CompactXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlNamedModelledWriter

public CompactXmlNamedModelledWriter(PsiXmlVersion version,
                                     File file)
                              throws IOException,
                                     XMLStreamException

Constructor for CompactXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlNamedModelledWriter

public CompactXmlNamedModelledWriter(PsiXmlVersion version,
                                     OutputStream output)
                              throws XMLStreamException

Constructor for CompactXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlNamedModelledWriter

public CompactXmlNamedModelledWriter(PsiXmlVersion version,
                                     Writer writer)
                              throws XMLStreamException

Constructor for CompactXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

CompactXmlNamedModelledWriter

public CompactXmlNamedModelledWriter(PsiXmlVersion version,
                                     XMLStreamWriter streamWriter,
                                     PsiXmlObjectCache cache)

Constructor for CompactXmlNamedModelledWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(ModelledInteraction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<ModelledInteraction>

Parameters:

interaction - a T object.

registerExperiment

protected void registerExperiment(ModelledInteraction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<ModelledInteraction>

Parameters:

interaction - a T object.

registerInteractionProperties

protected void registerInteractionProperties()

registerInteractionProperties.

Overrides:

registerInteractionProperties in class AbstractCompactXmlWriter<ModelledInteraction>

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledInteraction>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledInteraction>