Package psidev.psi.mi.jami.xml.io.writer.compact

Class CompactXmlNamedWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<I>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter<Interaction,ModelledInteraction,InteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.compact.CompactXmlNamedWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class CompactXmlNamedWriter
extends AbstractCompactXmlMixWriter<Interaction,ModelledInteraction,InteractionEvidence>

Compact PSI-XML writer for a mix of named interactions

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlNamedWriter(PsiXmlVersion version)	Constructor for CompactXmlNamedWriter.
CompactXmlNamedWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlNamedWriter.
CompactXmlNamedWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlNamedWriter.
CompactXmlNamedWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlNamedWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDelegateWriters()	initialiseDelegateWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter

close, flush, initialiseSubWriters, registerAvailabilities, registerExperiment, reset, setAvailabilitySet, setAvailabilityWriter, setComplexWriter, setDefaultReleaseDate, setDefaultSource, setElementCache, setEvidenceWriter, setExperimentSet, setExperimentWriter, setInteractionSet, setInteractorSet, setInteractorWriter, setLightWriter, setModelledWriter, setSourceWriter, setVersion, setWriteComplexesAsInteractors, write, write, write

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setCurrentInteraction, setCurrentSource, setEntryAnnotations, setInteractionsIterator, setInteractionWriter, setStarted, setSubWritersFactory, start, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlNamedWriter

public CompactXmlNamedWriter(PsiXmlVersion version)

Constructor for CompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlNamedWriter

public CompactXmlNamedWriter(PsiXmlVersion version,
                             File file)
                      throws IOException,
                             XMLStreamException

Constructor for CompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlNamedWriter

public CompactXmlNamedWriter(PsiXmlVersion version,
                             OutputStream output)
                      throws XMLStreamException

Constructor for CompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlNamedWriter

public CompactXmlNamedWriter(PsiXmlVersion version,
                             Writer writer)
                      throws XMLStreamException

Constructor for CompactXmlNamedWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

Method Detail

initialiseDelegateWriters

protected void initialiseDelegateWriters()

initialiseDelegateWriters.

Specified by:

initialiseDelegateWriters in class AbstractCompactXmlMixWriter<Interaction,ModelledInteraction,InteractionEvidence>