Package psidev.psi.mi.jami.xml.io.writer.compact.extended

Class CompactXmlModelledWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<ModelledInteraction>

psidev.psi.mi.jami.xml.io.writer.compact.extended.CompactXmlModelledWriter

All Implemented Interfaces:

InteractionWriter<ModelledInteraction>

public class CompactXmlModelledWriter
extends AbstractCompactXmlWriter<ModelledInteraction>

Compact PSI-XML writer for abstract interactions (no experimental evidences)

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlModelledWriter(PsiXmlVersion version)	Constructor for CompactXmlModelledWriter.
CompactXmlModelledWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlModelledWriter.
CompactXmlModelledWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlModelledWriter.
CompactXmlModelledWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlModelledWriter.
CompactXmlModelledWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for CompactXmlModelledWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseSubWriters()	initialiseSubWriters.
protected void	registerAvailabilities(ModelledInteraction interaction)	registerAvailabilities.
protected void	registerExperiment(ModelledInteraction interaction)	registerExperiment.
protected void	registerInteractionProperties()	registerInteractionProperties.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

close, getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerParticipantInteractor, registerParticipantPoolInteractor, reset, setAvailabilitySet, setAvailabilityWriter, setExperimentSet, setExperimentWriter, setInteractorSet, setInteractorWriter, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlModelledWriter

public CompactXmlModelledWriter(PsiXmlVersion version)

Constructor for CompactXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlModelledWriter

public CompactXmlModelledWriter(PsiXmlVersion version,
                                File file)
                         throws IOException,
                                XMLStreamException

Constructor for CompactXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlModelledWriter

public CompactXmlModelledWriter(PsiXmlVersion version,
                                OutputStream output)
                         throws XMLStreamException

Constructor for CompactXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlModelledWriter

public CompactXmlModelledWriter(PsiXmlVersion version,
                                Writer writer)
                         throws XMLStreamException

Constructor for CompactXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

CompactXmlModelledWriter

public CompactXmlModelledWriter(PsiXmlVersion version,
                                XMLStreamWriter streamWriter,
                                PsiXmlObjectCache cache)

Constructor for CompactXmlModelledWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

registerAvailabilities

protected void registerAvailabilities(ModelledInteraction interaction)

registerAvailabilities.

Specified by:

registerAvailabilities in class AbstractCompactXmlWriter<ModelledInteraction>

Parameters:

interaction - a T object.

registerInteractionProperties

protected void registerInteractionProperties()

registerInteractionProperties.

Overrides:

registerInteractionProperties in class AbstractCompactXmlWriter<ModelledInteraction>

registerExperiment

protected void registerExperiment(ModelledInteraction interaction)

registerExperiment.

Specified by:

registerExperiment in class AbstractCompactXmlWriter<ModelledInteraction>

Parameters:

interaction - a T object.

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledInteraction>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledInteraction>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<ModelledInteraction>