Package psidev.psi.mi.jami.xml.io.writer.compact.extended

Class CompactXmlWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter<I>

psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter<Interaction,ModelledInteraction,InteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.compact.extended.CompactXmlWriter

All Implemented Interfaces:

InteractionWriter<Interaction>

public class CompactXmlWriter
extends AbstractCompactXmlMixWriter<Interaction,ModelledInteraction,InteractionEvidence>

Compact PSI-XML writer for a mix of interactions

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompactXmlWriter(PsiXmlVersion version)	Constructor for CompactXmlWriter.
CompactXmlWriter(PsiXmlVersion version, File file)	Constructor for CompactXmlWriter.
CompactXmlWriter(PsiXmlVersion version, OutputStream output)	Constructor for CompactXmlWriter.
CompactXmlWriter(PsiXmlVersion version, Writer writer)	Constructor for CompactXmlWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDefaultSource()	initialiseDefaultSource.
protected void	initialiseDelegateWriters()	initialiseDelegateWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlMixWriter

close, flush, initialiseSubWriters, registerAvailabilities, registerExperiment, reset, setAvailabilitySet, setAvailabilityWriter, setComplexWriter, setDefaultReleaseDate, setDefaultSource, setElementCache, setEvidenceWriter, setExperimentSet, setExperimentWriter, setInteractionSet, setInteractorSet, setInteractorWriter, setLightWriter, setModelledWriter, setSourceWriter, setVersion, setWriteComplexesAsInteractors, write, write, write

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.compact.AbstractCompactXmlWriter

getAvailabilities, getAvailabilityWriter, getExperiments, getExperimentWriter, getInteractionType, getInteractors, getInteractorWriter, initialiseContext, initialiseDefaultAvailabilitySet, initialiseDefaultElementCache, initialiseDefaultExperimentSet, initialiseDefaultInteractorSet, initialiseOptionalWriters, registerAllInteractionsProperties, registerAllInteractors, registerAllInteractorsAndExperimentsFrom, registerInteractionProperties, registerParticipantInteractor, registerParticipantPoolInteractor, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseDefaultInteractionSet, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setCurrentInteraction, setCurrentSource, setEntryAnnotations, setInteractionsIterator, setInteractionWriter, setStarted, setSubWritersFactory, start, writeComplex, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteraction, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompactXmlWriter

public CompactXmlWriter(PsiXmlVersion version)

Constructor for CompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

CompactXmlWriter

public CompactXmlWriter(PsiXmlVersion version,
                        File file)
                 throws IOException,
                        XMLStreamException

Constructor for CompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

CompactXmlWriter

public CompactXmlWriter(PsiXmlVersion version,
                        OutputStream output)
                 throws XMLStreamException

Constructor for CompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

CompactXmlWriter

public CompactXmlWriter(PsiXmlVersion version,
                        Writer writer)
                 throws XMLStreamException

Constructor for CompactXmlWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

Method Detail

initialiseDelegateWriters

protected void initialiseDelegateWriters()

initialiseDelegateWriters.

Specified by:

initialiseDelegateWriters in class AbstractCompactXmlMixWriter<Interaction,ModelledInteraction,InteractionEvidence>

initialiseDefaultSource

protected void initialiseDefaultSource()

initialiseDefaultSource.

Overrides:

initialiseDefaultSource in class AbstractXmlWriter<Interaction>