Package psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25

Class AbstractXmlModelledParticipantWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlModelledParticipantWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlModelledParticipantWriter

All Implemented Interfaces:

PsiXmlElementWriter<ModelledParticipant>, PsiXmlParticipantWriter<ModelledParticipant>

Direct Known Subclasses:

XmlModelledParticipantWriter, XmlModelledParticipantWriter

public abstract class AbstractXmlModelledParticipantWriter
extends AbstractXmlModelledParticipantWriter

Abstract class for XML 2.5 writer of modelled participant

Since:

14/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AbstractXmlModelledParticipantWriter(PsiXmlVersion version, XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for AbstractXmlModelledParticipantWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseBiologicalRoleWriter()	initialiseBiologicalRoleWriter.
protected void	initialiseFeatureWriter()	initialiseFeatureWriter.
protected void	initialiseInteractorWriter()	initialiseInteractorWriter.
protected void	initialiseXrefWriter()	initialiseXrefWriter.
protected void	writeOtherAttributes(ModelledParticipant object, boolean writeAttributeList)	writeOtherAttributes.
protected void	writeParticipantPool(ParticipantPool pool)	writeParticipantPool.
protected void	writeStoichiometry(ModelledParticipant object)	writeStoichiometry.
protected void	writeStoichiometryAttribute(Stoichiometry stc)	writeStoichiometryAttribute.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlModelledParticipantWriter

writeConfidences, writeExperimentalInteractor, writeExperimentalPreparations, writeExperimentalRoles, writeHostOrganisms, writeMolecule, writeParameters, writeParticipantIdentificationMethods

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlParticipantWriter

getAliasWriter, getAttributeWriter, getBiologicalRoleWriter, getFeatureWriter, getInteractorWriter, getObjectIndex, getStreamWriter, getVersion, getXrefWriter, setAliasWriter, setAttributeWriter, setBiologicalRoleWriter, setComplexAsInteractor, setFeatureWriter, setInteractorWriter, setXrefWriter, write, writeAttributes, writeBiologicalRole, writeComplexAsInteractor, writeFeatures, writeInteractor, writeMoleculeDescription, writeMoleculeRef, writeNames, writeParticipant, writeXref, writeXrefFromParticipantXrefs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractXmlModelledParticipantWriter

public AbstractXmlModelledParticipantWriter(PsiXmlVersion version,
                                            XMLStreamWriter writer,
                                            PsiXmlObjectCache objectIndex)

Constructor for AbstractXmlModelledParticipantWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

writeParticipantPool

protected void writeParticipantPool(ParticipantPool pool)
                             throws XMLStreamException

writeParticipantPool.

Specified by:

writeParticipantPool in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

Parameters:

pool - a ParticipantPool object.

Throws:

XMLStreamException - if any.

initialiseXrefWriter

protected void initialiseXrefWriter()

initialiseXrefWriter.

Specified by:

initialiseXrefWriter in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

initialiseFeatureWriter

protected void initialiseFeatureWriter()

initialiseFeatureWriter.

Specified by:

initialiseFeatureWriter in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

initialiseBiologicalRoleWriter

protected void initialiseBiologicalRoleWriter()

initialiseBiologicalRoleWriter.

Specified by:

initialiseBiologicalRoleWriter in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

initialiseInteractorWriter

protected void initialiseInteractorWriter()

initialiseInteractorWriter.

Specified by:

initialiseInteractorWriter in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

writeStoichiometry

protected void writeStoichiometry(ModelledParticipant object)

writeStoichiometry.

Specified by:

writeStoichiometry in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

Parameters:

object - a ModelledParticipant object.

writeOtherAttributes

protected void writeOtherAttributes(ModelledParticipant object,
                                    boolean writeAttributeList)
                             throws XMLStreamException

writeOtherAttributes.

Specified by:

writeOtherAttributes in class AbstractXmlParticipantWriter<ModelledParticipant,ModelledFeature>

Parameters:

object - a P object.

writeAttributeList - a boolean.

Throws:

XMLStreamException - if any.

writeStoichiometryAttribute

protected void writeStoichiometryAttribute(Stoichiometry stc)
                                    throws XMLStreamException

writeStoichiometryAttribute.

Parameters:

stc - a Stoichiometry object.

Throws:

XMLStreamException - if any.