Package psidev.psi.mi.jami.model

Interface ParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>

All Superinterfaces:

Collection<P>, Entity<F>, Iterable<P>, Participant<I,F>

All Known Subinterfaces:

ExperimentalParticipantPool, ModelledParticipantPool

All Known Implementing Classes:

AbstractParticipantPool, AbstractXmlParticipantPool, AbstractXmlParticipantPool, AbstractXmlParticipantPool, CsvExperimentalParticipantPool, DefaultExperimentalParticipantPool, DefaultModelledParticipantPool, DefaultParticipantPool, XmlExperimentalParticipantPool, XmlExperimentalParticipantPool, XmlExperimentalParticipantPool, XmlExperimentalParticipantPoolWrapper, XmlExperimentalParticipantPoolWrapper, XmlExperimentalParticipantPoolWrapper, XmlModelledParticipantPool, XmlModelledParticipantPool, XmlModelledParticipantPool, XmlParticipantPoolWrapper, XmlParticipantPoolWrapper, XmlParticipantPoolWrapper

public interface ParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate>
extends Participant<I,F>, Collection<P>

A pool of participants that can be grouped together as a single participant as they are interchangeable

Since:

24/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Participant

ACCEPTOR_ROLE, ACCEPTOR_ROLE_MI, BAIT_ROLE, BAIT_ROLE_MI, DONOR_ROLE, DONOR_ROLE_MI, ELECTRON_ACCEPTOR_ROLE, ELECTRON_ACCEPTOR_ROLE_MI, ELECTRON_DONOR_ROLE, ELECTRON_DONOR_ROLE_MI, ENZYME_REGULATOR_ROLE, ENZYME_REGULATOR_ROLE_MI, ENZYME_ROLE, ENZYME_ROLE_MI, ENZYME_TARGET_ROLE, ENZYME_TARGET_ROLE_MI, FLUORESCENCE_ACCEPTOR_ROLE, FLUORESCENCE_ACCEPTOR_ROLE_MI, FLUORESCENCE_DONOR_ROLE, FLUORESCENCE_DONOR_ROLE_MI, INHIBITED, INHIBITED_MI, INHIBITOR, INHIBITOR_MI, NEUTRAL, NEUTRAL_MI, PHOSPHATE_ACCEPTOR_ROLE, PHOSPHATE_ACCEPTOR_ROLE_MI, PHOSPHATE_DONOR_ROLE, PHOSPHATE_DONOR_ROLE_MI, PHOTON_ACCEPTOR_ROLE, PHOTON_ACCEPTOR_ROLE_MI, PHOTON_DONOR_ROLE, PHOTON_DONOR_ROLE_MI, PREDETERMINED, PREDETERMINED_MI, PREY, PREY_MI, PUTATIVE_SELF_ROLE, PUTATIVE_SELF_ROLE_MI, SELF_ROLE, SELF_ROLE_MI, SUPPRESSED_GENE_ROLE, SUPPRESSED_GENE_ROLE_MI, SUPPRESSOR_GENE_ROLE, SUPPRESSOR_GENE_ROLE_MI, UNSPECIFIED_ROLE, UNSPECIFIED_ROLE_MI

Method Summary

Modifier and Type	Method	Description
CvTerm	getType()	The pool type of this participant pool.
void	setType(CvTerm type)	Sets the pool type for this participant pool If the given type is null, this method automatically sets the interactor type to 'molecule set' (MI:1304)

Methods inherited from interface java.util.Collection

add, addAll, clear, contains, containsAll, equals, hashCode, isEmpty, iterator, parallelStream, remove, removeAll, removeIf, retainAll, size, spliterator, stream, toArray, toArray, toArray

Methods inherited from interface psidev.psi.mi.jami.model.Entity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Methods inherited from interface java.lang.Iterable

forEach

Methods inherited from interface psidev.psi.mi.jami.model.Participant

getAliases, getAnnotations, getBiologicalEffect, getBiologicalRole, getInteraction, getXrefs, setBiologicalEffect, setBiologicalRole, setInteraction, setInteractionAndAddParticipant

Method Detail

getType

CvTerm getType()

The pool type of this participant pool. It is a controlled vocabulary term and cannot be null. Ex: molecule set, candidate set, defined set, ...

Returns:

pool type

setType

void setType(CvTerm type)

Sets the pool type for this participant pool If the given type is null, this method automatically sets the interactor type to 'molecule set' (MI:1304)

Parameters:

type - : molecule type