Package psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30

Class AbstractXmlCooperativeEffectWriter<C extends CooperativeEffect>

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml30.AbstractXmlCooperativeEffectWriter<C>

All Implemented Interfaces:

PsiXmlElementWriter<C>

Direct Known Subclasses:

XmlAllosteryWriter, XmlPreAssemblyWriter

public abstract class AbstractXmlCooperativeEffectWriter<C extends CooperativeEffect>
extends Object
implements PsiXmlElementWriter<C>

Abstract Xml 3.0 writer for cooperative effect

Since:

12/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
AbstractXmlCooperativeEffectWriter(XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for AbstractXmlCooperativeEffectWriter.

Method Summary

Modifier and Type	Method	Description
PsiXmlElementWriter<Annotation>	getAttributeWriter()	Getter for the field attributeWriter.
PsiXmlElementWriter<CooperativityEvidence>	getCooperativityEvidenceWriter()	Getter for the field cooperativityEvidenceWriter.
PsiXmlVariableNameWriter<CvTerm>	getCvWriter()	Getter for the field cvWriter.
protected PsiXmlObjectCache	getObjectIndex()	Getter for the field objectIndex.
protected XMLStreamWriter	getStreamWriter()	Getter for the field streamWriter.
protected void	initialiseCooperativityEvidenceWriter()	initialiseCooperativityEvidenceWriter.
protected void	initialiseCvWriter()	initialiseCvWriter.
void	setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)	Setter for the field attributeWriter.
void	setCooperativityEvidenceWriter(PsiXmlElementWriter<CooperativityEvidence> cooperativityEvidenceWriter)	Setter for the field cooperativityEvidenceWriter.
void	setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)	Setter for the field cvWriter.
void	write(C object)	write.
protected void	writeAffectedInteractionList(C object)	writeAffectedInteractionList.
protected void	writeAttributes(C object)	writeAttributes.
protected void	writeCooperativityEvidenceList(C object)	writeCooperativityEvidenceList.
protected abstract void	writeOtherProperties(C object)	writeOtherProperties.
protected void	writeOutcome(C object)	writeOutcome.
protected void	writeResponse(C object)	writeResponse.
protected abstract void	writeStartCooperativeEffect()	writeStartCooperativeEffect.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractXmlCooperativeEffectWriter

public AbstractXmlCooperativeEffectWriter(XMLStreamWriter writer,
                                          PsiXmlObjectCache objectIndex)

Constructor for AbstractXmlCooperativeEffectWriter.

Parameters:

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

getCooperativityEvidenceWriter

public PsiXmlElementWriter<CooperativityEvidence> getCooperativityEvidenceWriter()

Getter for the field cooperativityEvidenceWriter.

Returns:

a PsiXmlElementWriter object.

initialiseCooperativityEvidenceWriter

protected void initialiseCooperativityEvidenceWriter()

initialiseCooperativityEvidenceWriter.

setCooperativityEvidenceWriter

public void setCooperativityEvidenceWriter(PsiXmlElementWriter<CooperativityEvidence> cooperativityEvidenceWriter)

Setter for the field cooperativityEvidenceWriter.

Parameters:

cooperativityEvidenceWriter - a PsiXmlElementWriter object.

getAttributeWriter

public PsiXmlElementWriter<Annotation> getAttributeWriter()

Getter for the field attributeWriter.

Returns:

a PsiXmlElementWriter object.

setAttributeWriter

public void setAttributeWriter(PsiXmlElementWriter<Annotation> attributeWriter)

Setter for the field attributeWriter.

Parameters:

attributeWriter - a PsiXmlElementWriter object.

getCvWriter

public PsiXmlVariableNameWriter<CvTerm> getCvWriter()

Getter for the field cvWriter.

Returns:

a PsiXmlVariableNameWriter object.

initialiseCvWriter

protected void initialiseCvWriter()

initialiseCvWriter.

setCvWriter

public void setCvWriter(PsiXmlVariableNameWriter<CvTerm> cvWriter)

Setter for the field cvWriter.

Parameters:

cvWriter - a PsiXmlVariableNameWriter object.

write

public void write(C object)
           throws MIIOException

write.

Specified by:

write in interface PsiXmlElementWriter<C extends CooperativeEffect>

Parameters:

object - a T object.

Throws:

MIIOException - if any.

writeOutcome

protected void writeOutcome(C object)

writeOutcome.

Parameters:

object - a C object.

writeResponse

protected void writeResponse(C object)

writeResponse.

Parameters:

object - a C object.

writeAttributes

protected void writeAttributes(C object)
                        throws XMLStreamException

writeAttributes.

Parameters:

object - a C object.

Throws:

XMLStreamException - if any.

writeOtherProperties

protected abstract void writeOtherProperties(C object)
                                      throws XMLStreamException

writeOtherProperties.

Parameters:

object - a C object.

Throws:

XMLStreamException - if any.

writeAffectedInteractionList

protected void writeAffectedInteractionList(C object)
                                     throws XMLStreamException

writeAffectedInteractionList.

Parameters:

object - a C object.

Throws:

XMLStreamException - if any.

writeStartCooperativeEffect

protected abstract void writeStartCooperativeEffect()
                                             throws XMLStreamException

writeStartCooperativeEffect.

Throws:

XMLStreamException - if any.

writeCooperativityEvidenceList

protected void writeCooperativityEvidenceList(C object)
                                       throws XMLStreamException

writeCooperativityEvidenceList.

Parameters:

object - a C object.

Throws:

XMLStreamException - if any.

getStreamWriter

protected XMLStreamWriter getStreamWriter()

Getter for the field streamWriter.

Returns:

a XMLStreamWriter object.

getObjectIndex

protected PsiXmlObjectCache getObjectIndex()

Getter for the field objectIndex.

Returns:

a PsiXmlObjectCache object.