Package psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25

Class XmlNamedBinaryInteractionWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter<T,Participant>

psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter<BinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25.XmlBasicBinaryInteractionWriter

psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25.XmlNamedBinaryInteractionWriter

All Implemented Interfaces:

ExpandedPsiXmlElementWriter<BinaryInteraction>, PsiXmlElementWriter<BinaryInteraction>, PsiXmlInteractionWriter<BinaryInteraction>

public class XmlNamedBinaryInteractionWriter
extends XmlBasicBinaryInteractionWriter

Expanded XML 2.5 writer for a basic binary interaction (ignore experimental details). Interactions are named interactions with a fullname and aliases in addition to a shortname

Since:

15/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlNamedBinaryInteractionWriter(PsiXmlVersion version, XMLStreamWriter writer, PsiXmlObjectCache objectIndex)	Constructor for XmlNamedBinaryInteractionWriter.

Method Summary

Modifier and Type	Method	Description
PsiXmlElementWriter<Alias>	getAliasWriter()	Getter for the field aliasWriter.
protected void	initialiseExperimentWriter()	initialiseExperimentWriter.
protected void	initialiseParticipantWriter()	initialiseParticipantWriter.
void	setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)	Setter for the field aliasWriter.
protected void	writeNames(BinaryInteraction object)	writeNames.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.expanded.xml25.XmlBasicBinaryInteractionWriter

writeAttributes, writeExperiments

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.xml25.AbstractXmlInteractionWriter

initialiseInferredInteractionWriter, initialiseInteractionTypeWriter, initialiseXrefWriter, writeAvailability, writeConfidences, writeInferredInteractions, writeIntraMolecular, writeModelled, writeNegative, writeOtherAttributes, writeOtherProperties, writeParameters, writeStartInteraction

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.elements.impl.abstracts.AbstractXmlInteractionWriter

collectInferredInteractionsFrom, extractDefaultExperimentFrom, getAttributeWriter, getChecksumWriter, getDefaultExperiment, getExperimentWriter, getInferredInteractionWriter, getInteractionTypeWriter, getObjectIndex, getParticipantWriter, getStreamWriter, getVersion, getXrefWriter, initialiseDefaultExperiment, newExperiment, newPublication, newPublication, newXmlCvTerm, setAttributeWriter, setChecksumWriter, setComplexAsInteractor, setDefaultExperiment, setExperimentWriter, setInferredInteractionWriter, setInteractionTypeWriter, setParticipantWriter, setXrefWriter, write, writeAttribute, writeComplexAsInteractor, writeExperimentDescription, writeExperimentRef, writeInteractionType, writeParticipants, writeXref, writeXrefFromInteractionIdentifiers, writeXrefFromInteractionXrefs

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

write

Constructor Detail

XmlNamedBinaryInteractionWriter

public XmlNamedBinaryInteractionWriter(PsiXmlVersion version,
                                       XMLStreamWriter writer,
                                       PsiXmlObjectCache objectIndex)

Constructor for XmlNamedBinaryInteractionWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a XMLStreamWriter object.

objectIndex - a PsiXmlObjectCache object.

Method Detail

initialiseParticipantWriter

protected void initialiseParticipantWriter()

initialiseParticipantWriter.

Overrides:

initialiseParticipantWriter in class XmlBasicBinaryInteractionWriter

getAliasWriter

public PsiXmlElementWriter<Alias> getAliasWriter()

Getter for the field aliasWriter.

Returns:

a PsiXmlElementWriter object.

setAliasWriter

public void setAliasWriter(PsiXmlElementWriter<Alias> aliasWriter)

Setter for the field aliasWriter.

Parameters:

aliasWriter - a PsiXmlElementWriter object.

initialiseExperimentWriter

protected void initialiseExperimentWriter()

initialiseExperimentWriter.

Overrides:

initialiseExperimentWriter in class AbstractXmlInteractionWriter<BinaryInteraction>

writeNames

protected void writeNames(BinaryInteraction object)
                   throws XMLStreamException

writeNames.

Overrides:

writeNames in class AbstractXmlInteractionWriter<BinaryInteraction,Participant>

Parameters:

object - a T object.

Throws:

XMLStreamException - if any.