Package psidev.psi.mi.jami.xml.io.writer.elements

Interface PsiXmlInteractionWriter<T extends Interaction>

All Superinterfaces:

PsiXmlElementWriter<T>

All Known Subinterfaces:

PsiXmlExtendedInteractionWriter<T>

All Known Implementing Classes:

AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionEvidenceWriter, AbstractXmlInteractionWriter, AbstractXmlInteractionWriter, AbstractXmlInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, AbstractXmlModelledInteractionWriter, XmlBasicBinaryInteractionWriter, XmlBasicBinaryInteractionWriter, XmlBasicBinaryInteractionWriter, XmlBasicBinaryInteractionWriter, XmlBasicInteractionWriter, XmlBasicInteractionWriter, XmlBasicInteractionWriter, XmlBasicInteractionWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlBinaryInteractionEvidenceWriter, XmlComplexWriter, XmlComplexWriter, XmlComplexWriter, XmlComplexWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlInteractionEvidenceWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledBinaryInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlModelledInteractionWriter, XmlNamedBinaryInteractionEvidenceWriter, XmlNamedBinaryInteractionEvidenceWriter, XmlNamedBinaryInteractionEvidenceWriter, XmlNamedBinaryInteractionEvidenceWriter, XmlNamedBinaryInteractionWriter, XmlNamedBinaryInteractionWriter, XmlNamedInteractionEvidenceWriter, XmlNamedInteractionEvidenceWriter, XmlNamedInteractionEvidenceWriter, XmlNamedInteractionEvidenceWriter, XmlNamedInteractionWriter, XmlNamedInteractionWriter, XmlNamedModelledBinaryInteractionWriter, XmlNamedModelledBinaryInteractionWriter, XmlNamedModelledBinaryInteractionWriter, XmlNamedModelledBinaryInteractionWriter, XmlNamedModelledInteractionWriter, XmlNamedModelledInteractionWriter, XmlNamedModelledInteractionWriter, XmlNamedModelledInteractionWriter

public interface PsiXmlInteractionWriter<T extends Interaction>
extends PsiXmlElementWriter<T>

Interface for PSI-XML interaction writers that have to write an experiment in XML even if the interaction does not have any experimental details

Since:

14/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

Modifier and Type	Method	Description
Experiment	extractDefaultExperimentFrom(T interaction)	extractDefaultExperimentFrom.
Experiment	getDefaultExperiment()	The default experiment that will be used to write a valid XML file but is not a real experiment attached to the interaction.
void	setComplexAsInteractor(boolean complexAsInteractor)	Sets the property of the writer to write a complex as an interactor or as an interaction
void	setDefaultExperiment(Experiment exp)	Sets the default experiment that will be used to write a valid XML file even if the interaction does not have any valid experiment
boolean	writeComplexAsInteractor()	writeComplexAsInteractor.

Methods inherited from interface psidev.psi.mi.jami.xml.io.writer.elements.PsiXmlElementWriter

write

Method Detail

getDefaultExperiment

Experiment getDefaultExperiment()

The default experiment that will be used to write a valid XML file but is not a real experiment attached to the interaction. It can be null in some specific cases.

Returns:

the default experiment used by this writer

setDefaultExperiment

void setDefaultExperiment(Experiment exp)

Sets the default experiment that will be used to write a valid XML file even if the interaction does not have any valid experiment

Parameters:

exp - : default experiment

extractDefaultExperimentFrom

Experiment extractDefaultExperimentFrom(T interaction)

extractDefaultExperimentFrom.

Parameters:

interaction - a T object.

Returns:

the default experiment for this interaction

writeComplexAsInteractor

boolean writeComplexAsInteractor()

writeComplexAsInteractor.

Returns:

true if the participant writer will write a complex as an interactor

setComplexAsInteractor

void setComplexAsInteractor(boolean complexAsInteractor)

Sets the property of the writer to write a complex as an interactor or as an interaction

Parameters:

complexAsInteractor - a boolean.