Package psidev.psi.mi.jami.xml.io.writer.expanded

Class ExpandedXmlNamedBinaryEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.expanded.ExpandedXmlNamedBinaryEvidenceWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteractionEvidence>

public class ExpandedXmlNamedBinaryEvidenceWriter
extends AbstractExpandedXmlWriter<BinaryInteractionEvidence>

Expanded PSI-XML writer for named binary interaction evidences (full experimental evidences) Participants, features and experiments also have expanded names to write

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version)	Constructor for ExpandedXmlNamedBinaryEvidenceWriter.
ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlNamedBinaryEvidenceWriter.
ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlNamedBinaryEvidenceWriter.
ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlNamedBinaryEvidenceWriter.
ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for ExpandedXmlNamedBinaryEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeComplex, writeInteraction, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlNamedBinaryEvidenceWriter

public ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version)

Constructor for ExpandedXmlNamedBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlNamedBinaryEvidenceWriter

public ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version,
                                            File file)
                                     throws IOException,
                                            XMLStreamException

Constructor for ExpandedXmlNamedBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlNamedBinaryEvidenceWriter

public ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version,
                                            OutputStream output)
                                     throws XMLStreamException

Constructor for ExpandedXmlNamedBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedBinaryEvidenceWriter

public ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version,
                                            Writer writer)
                                     throws XMLStreamException

Constructor for ExpandedXmlNamedBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedBinaryEvidenceWriter

public ExpandedXmlNamedBinaryEvidenceWriter(PsiXmlVersion version,
                                            XMLStreamWriter streamWriter,
                                            PsiXmlObjectCache cache)

Constructor for ExpandedXmlNamedBinaryEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<BinaryInteractionEvidence>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<BinaryInteractionEvidence>