Package psidev.psi.mi.jami.xml.io.writer.expanded

Class AbstractExpandedXmlWriter<T extends Interaction>

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<T>

All Implemented Interfaces:

InteractionWriter<T>

Direct Known Subclasses:

AbstractExpandedXmlMixWriter, ExpandedXmlBinaryEvidenceWriter, ExpandedXmlBinaryEvidenceWriter, ExpandedXmlComplexWriter, ExpandedXmlComplexWriter, ExpandedXmlEvidenceWriter, ExpandedXmlEvidenceWriter, ExpandedXmlModelledBinaryWriter, ExpandedXmlModelledBinaryWriter, ExpandedXmlModelledWriter, ExpandedXmlModelledWriter, ExpandedXmlNamedBinaryEvidenceWriter, ExpandedXmlNamedEvidenceWriter, ExpandedXmlNamedModelledBinaryWriter, ExpandedXmlNamedModelledWriter, LightExpandedXmlBinaryWriter, LightExpandedXmlBinaryWriter, LightExpandedXmlNamedBinaryWriter, LightExpandedXmlNamedWriter, LightExpandedXmlWriter, LightExpandedXmlWriter

public abstract class AbstractExpandedXmlWriter<T extends Interaction>
extends AbstractXmlWriter<T>

Abstract class for expanded PSI-xml writers

Since:

18/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Modifier	Constructor	Description
	AbstractExpandedXmlWriter(PsiXmlVersion version, Class<T> type)	Constructor for AbstractExpandedXmlWriter.
	AbstractExpandedXmlWriter(PsiXmlVersion version, Class<T> type, File file)	Constructor for AbstractExpandedXmlWriter.
	AbstractExpandedXmlWriter(PsiXmlVersion version, Class<T> type, OutputStream output)	Constructor for AbstractExpandedXmlWriter.
	AbstractExpandedXmlWriter(PsiXmlVersion version, Class<T> type, Writer writer)	Constructor for AbstractExpandedXmlWriter.
protected	AbstractExpandedXmlWriter(PsiXmlVersion version, Class<T> type, XMLStreamWriter streamWriter, PsiXmlObjectCache elementCache)	Constructor for AbstractExpandedXmlWriter.

Method Summary

Modifier and Type	Method	Description
protected Class<T>	getInteractionType()	getInteractionType.
protected void	initialiseDefaultElementCache()	initialiseDefaultElementCache.
protected void	initialiseOptionalWriters(PsiXmlExperimentWriter experimentWriter, PsiXmlElementWriter<String> availabilityWriter, PsiXmlElementWriter<Interactor> interactorWriter)	initialiseOptionalWriters.
protected void	writeComplex(ModelledInteraction modelled)	writeComplex.
protected void	writeInteraction()	writeInteraction.
protected void	writeStartEntryContent()	writeStartEntryContent.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, extractSourceFromInteraction, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

AbstractExpandedXmlWriter

public AbstractExpandedXmlWriter(PsiXmlVersion version,
                                 Class<T> type)

Constructor for AbstractExpandedXmlWriter.

Parameters:

version - a PsiXmlVersion object.

type - a Class object.

AbstractExpandedXmlWriter

public AbstractExpandedXmlWriter(PsiXmlVersion version,
                                 Class<T> type,
                                 File file)
                          throws IOException,
                                 XMLStreamException

Constructor for AbstractExpandedXmlWriter.

Parameters:

version - a PsiXmlVersion object.

type - a Class object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

AbstractExpandedXmlWriter

public AbstractExpandedXmlWriter(PsiXmlVersion version,
                                 Class<T> type,
                                 OutputStream output)
                          throws XMLStreamException

Constructor for AbstractExpandedXmlWriter.

Parameters:

version - a PsiXmlVersion object.

type - a Class object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

AbstractExpandedXmlWriter

public AbstractExpandedXmlWriter(PsiXmlVersion version,
                                 Class<T> type,
                                 Writer writer)
                          throws XMLStreamException

Constructor for AbstractExpandedXmlWriter.

Parameters:

version - a PsiXmlVersion object.

type - a Class object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

AbstractExpandedXmlWriter

protected AbstractExpandedXmlWriter(PsiXmlVersion version,
                                    Class<T> type,
                                    XMLStreamWriter streamWriter,
                                    PsiXmlObjectCache elementCache)

Constructor for AbstractExpandedXmlWriter.

Parameters:

version - a PsiXmlVersion object.

type - a Class object.

streamWriter - a XMLStreamWriter object.

elementCache - a PsiXmlObjectCache object.

Method Detail

initialiseOptionalWriters

protected void initialiseOptionalWriters(PsiXmlExperimentWriter experimentWriter,
                                         PsiXmlElementWriter<String> availabilityWriter,
                                         PsiXmlElementWriter<Interactor> interactorWriter)

initialiseOptionalWriters.

Specified by:

initialiseOptionalWriters in class AbstractXmlWriter<T extends Interaction>

Parameters:

experimentWriter - a PsiXmlExperimentWriter object.

availabilityWriter - a PsiXmlElementWriter object.

interactorWriter - a PsiXmlElementWriter object.

initialiseDefaultElementCache

protected void initialiseDefaultElementCache()

initialiseDefaultElementCache.

Specified by:

initialiseDefaultElementCache in class AbstractXmlWriter<T extends Interaction>

writeStartEntryContent

protected void writeStartEntryContent()
                               throws XMLStreamException

writeStartEntryContent.

Specified by:

writeStartEntryContent in class AbstractXmlWriter<T extends Interaction>

Throws:

XMLStreamException - if any.

getInteractionType

protected Class<T> getInteractionType()

getInteractionType.

Returns:

a Class object.

writeInteraction

protected void writeInteraction()
                         throws XMLStreamException

writeInteraction.

Overrides:

writeInteraction in class AbstractXmlWriter<T extends Interaction>

Throws:

XMLStreamException - if any.

writeComplex

protected void writeComplex(ModelledInteraction modelled)

writeComplex.

Overrides:

writeComplex in class AbstractXmlWriter<T extends Interaction>

Parameters:

modelled - a ModelledInteraction object.