Package psidev.psi.mi.jami.xml.io.writer.expanded

Class ExpandedXmlNamedBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<I>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.expanded.ExpandedXmlNamedBinaryWriter

All Implemented Interfaces:

InteractionWriter<BinaryInteraction>

public class ExpandedXmlNamedBinaryWriter
extends AbstractExpandedXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>

Expanded PSI-XML writer for a mix of named binary interactions

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlNamedBinaryWriter(PsiXmlVersion version)	Constructor for ExpandedXmlNamedBinaryWriter.
ExpandedXmlNamedBinaryWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlNamedBinaryWriter.
ExpandedXmlNamedBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlNamedBinaryWriter.
ExpandedXmlNamedBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlNamedBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected void	initialiseDelegateWriters()	initialiseDelegateWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlMixWriter

close, flush, getEvidenceWriter, getLightWriter, getModelledWriter, initialiseSubWriters, reset, setComplexWriter, setDefaultReleaseDate, setDefaultSource, setElementCache, setEvidenceWriter, setInteractionSet, setLightWriter, setModelledWriter, setSourceWriter, setVersion, setWriteComplexesAsInteractors, write, write, write

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeComplex, writeInteraction, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

end, extractSourceFromInteraction, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, setAnnotationsWriter, setCurrentInteraction, setCurrentSource, setEntryAnnotations, setInteractionsIterator, setInteractionWriter, setStarted, setSubWritersFactory, start, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlNamedBinaryWriter

public ExpandedXmlNamedBinaryWriter(PsiXmlVersion version)

Constructor for ExpandedXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlNamedBinaryWriter

public ExpandedXmlNamedBinaryWriter(PsiXmlVersion version,
                                    File file)
                             throws IOException,
                                    XMLStreamException

Constructor for ExpandedXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlNamedBinaryWriter

public ExpandedXmlNamedBinaryWriter(PsiXmlVersion version,
                                    OutputStream output)
                             throws XMLStreamException

Constructor for ExpandedXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedBinaryWriter

public ExpandedXmlNamedBinaryWriter(PsiXmlVersion version,
                                    Writer writer)
                             throws XMLStreamException

Constructor for ExpandedXmlNamedBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

Method Detail

initialiseDelegateWriters

protected void initialiseDelegateWriters()

initialiseDelegateWriters.

Specified by:

initialiseDelegateWriters in class AbstractExpandedXmlMixWriter<BinaryInteraction,ModelledBinaryInteraction,BinaryInteractionEvidence>