Package psidev.psi.mi.jami.xml.io.writer.expanded

Class ExpandedXmlNamedEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<InteractionEvidence>

psidev.psi.mi.jami.xml.io.writer.expanded.ExpandedXmlNamedEvidenceWriter

All Implemented Interfaces:

InteractionWriter<InteractionEvidence>

public class ExpandedXmlNamedEvidenceWriter
extends AbstractExpandedXmlWriter<InteractionEvidence>

Expanded PSI-XML writer for named interaction evidences (full experimental evidences) Participants, features and experiments also have expanded names to write

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version)	Constructor for ExpandedXmlNamedEvidenceWriter.
ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlNamedEvidenceWriter.
ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlNamedEvidenceWriter.
ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlNamedEvidenceWriter.
ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for ExpandedXmlNamedEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeComplex, writeInteraction, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlNamedEvidenceWriter

public ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version)

Constructor for ExpandedXmlNamedEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlNamedEvidenceWriter

public ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version,
                                      File file)
                               throws IOException,
                                      XMLStreamException

Constructor for ExpandedXmlNamedEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlNamedEvidenceWriter

public ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version,
                                      OutputStream output)
                               throws XMLStreamException

Constructor for ExpandedXmlNamedEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedEvidenceWriter

public ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version,
                                      Writer writer)
                               throws XMLStreamException

Constructor for ExpandedXmlNamedEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedEvidenceWriter

public ExpandedXmlNamedEvidenceWriter(PsiXmlVersion version,
                                      XMLStreamWriter streamWriter,
                                      PsiXmlObjectCache cache)

Constructor for ExpandedXmlNamedEvidenceWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<InteractionEvidence>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<InteractionEvidence>