Package psidev.psi.mi.jami.xml.io.writer.expanded

Class ExpandedXmlNamedModelledBinaryWriter

java.lang.Object

psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter<T>

psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter<ModelledBinaryInteraction>

psidev.psi.mi.jami.xml.io.writer.expanded.ExpandedXmlNamedModelledBinaryWriter

All Implemented Interfaces:

InteractionWriter<ModelledBinaryInteraction>

public class ExpandedXmlNamedModelledBinaryWriter
extends AbstractExpandedXmlWriter<ModelledBinaryInteraction>

Expanded PSI-XML writer for named modelled binary interactions (no experimental evidences). Participants, features, experiments also have expanded names

Since:

19/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version)	Constructor for ExpandedXmlNamedModelledBinaryWriter.
ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version, File file)	Constructor for ExpandedXmlNamedModelledBinaryWriter.
ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version, OutputStream output)	Constructor for ExpandedXmlNamedModelledBinaryWriter.
ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version, Writer writer)	Constructor for ExpandedXmlNamedModelledBinaryWriter.
ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version, XMLStreamWriter streamWriter, PsiXmlObjectCache cache)	Constructor for ExpandedXmlNamedModelledBinaryWriter.

Method Summary

Modifier and Type	Method	Description
protected Source	extractSourceFromInteraction()	extractSourceFromInteraction.
protected void	initialiseSubWriters()	initialiseSubWriters.

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.expanded.AbstractExpandedXmlWriter

getInteractionType, initialiseDefaultElementCache, initialiseOptionalWriters, writeComplex, writeInteraction, writeStartEntryContent

Methods inherited from class psidev.psi.mi.jami.xml.io.writer.AbstractXmlWriter

close, end, flush, getComplexWriter, getCurrentInteraction, getCurrentSource, getElementCache, getInteractionsIterator, getInteractionWriter, getProcessedInteractions, getStreamWriter, getSubWritersFactory, getVersion, initialiseContext, initialiseDefaultInteractionSet, initialiseDefaultSource, initialiseSubWriters, isStarted, newXmlSource, reset, setAnnotationsWriter, setComplexWriter, setCurrentInteraction, setCurrentSource, setDefaultReleaseDate, setDefaultSource, setElementCache, setEntryAnnotations, setInteractionSet, setInteractionsIterator, setInteractionWriter, setSourceWriter, setStarted, setSubWritersFactory, setVersion, setWriteComplexesAsInteractors, start, write, write, write, writeComplexesAsInteractors, writeEndEntry, writeEndEntryContent, writeEndInteractionList, writeEntryAttributes, writeEntrySetAttributes, writeInteractionListContent, writeSource, writeStartEntry, writeStartInteractionList, writeSubComplexInEntry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ExpandedXmlNamedModelledBinaryWriter

public ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version)

Constructor for ExpandedXmlNamedModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

ExpandedXmlNamedModelledBinaryWriter

public ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version,
                                            File file)
                                     throws IOException,
                                            XMLStreamException

Constructor for ExpandedXmlNamedModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

file - a File object.

Throws:

IOException - if any.

XMLStreamException - if any.

ExpandedXmlNamedModelledBinaryWriter

public ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version,
                                            OutputStream output)
                                     throws XMLStreamException

Constructor for ExpandedXmlNamedModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

output - a OutputStream object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedModelledBinaryWriter

public ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version,
                                            Writer writer)
                                     throws XMLStreamException

Constructor for ExpandedXmlNamedModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

writer - a Writer object.

Throws:

XMLStreamException - if any.

ExpandedXmlNamedModelledBinaryWriter

public ExpandedXmlNamedModelledBinaryWriter(PsiXmlVersion version,
                                            XMLStreamWriter streamWriter,
                                            PsiXmlObjectCache cache)

Constructor for ExpandedXmlNamedModelledBinaryWriter.

Parameters:

version - a PsiXmlVersion object.

streamWriter - a XMLStreamWriter object.

cache - a PsiXmlObjectCache object.

Method Detail

extractSourceFromInteraction

protected Source extractSourceFromInteraction()

extractSourceFromInteraction.

Overrides:

extractSourceFromInteraction in class AbstractXmlWriter<ModelledBinaryInteraction>

Returns:

a Source object.

initialiseSubWriters

protected void initialiseSubWriters()

initialiseSubWriters.

Specified by:

initialiseSubWriters in class AbstractXmlWriter<ModelledBinaryInteraction>