Package psidev.psi.mi.jami.xml.listener

Class PsiXmlParserLogger

java.lang.Object

psidev.psi.mi.jami.listener.impl.MIFileParserLogger

psidev.psi.mi.jami.xml.listener.PsiXmlParserLogger

All Implemented Interfaces:

MIFileParserListener, PsiXmlParserListener

public class PsiXmlParserLogger
extends MIFileParserLogger
implements PsiXmlParserListener

Logger for MitabParser

Since:

24/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
PsiXmlParserLogger()

Method Summary

Modifier and Type	Method	Description
void	onSeveralExperimentalRolesFound(Collection<CvTerm> roles, FileSourceLocator locator)	onSeveralExperimentalRolesFound.
void	onSeveralExperimentsFound(Collection<Experiment> experiments, FileSourceLocator locator)	onSeveralExperimentsFound.
void	onSeveralExpressedInOrganismFound(Collection<Organism> organisms, FileSourceLocator locator)	onSeveralExpressedInOrganismFound.
void	onSeveralHostOrganismFound(Collection<Organism> organisms, FileSourceLocator locator)	onSeveralHostOrganismFound.
void	onUnresolvedReference(XmlIdReference ref, String message)	onUnresolvedReference.

Methods inherited from class psidev.psi.mi.jami.listener.impl.MIFileParserLogger

onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.listener.MIFileParserListener

onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId

Constructor Detail

PsiXmlParserLogger

public PsiXmlParserLogger()

Method Detail

onUnresolvedReference

public void onUnresolvedReference(XmlIdReference ref,
                                  String message)

onUnresolvedReference.

Specified by:

onUnresolvedReference in interface PsiXmlParserListener

Parameters:

ref - a XmlIdReference object.

message - a String object.

onSeveralHostOrganismFound

public void onSeveralHostOrganismFound(Collection<Organism> organisms,
                                       FileSourceLocator locator)

onSeveralHostOrganismFound.

Specified by:

onSeveralHostOrganismFound in interface PsiXmlParserListener

Parameters:

organisms - a Collection object.

locator - a FileSourceLocator object.

onSeveralExpressedInOrganismFound

public void onSeveralExpressedInOrganismFound(Collection<Organism> organisms,
                                              FileSourceLocator locator)

onSeveralExpressedInOrganismFound.

Specified by:

onSeveralExpressedInOrganismFound in interface PsiXmlParserListener

Parameters:

organisms - a Collection object.

locator - a FileSourceLocator object.

onSeveralExperimentalRolesFound

public void onSeveralExperimentalRolesFound(Collection<CvTerm> roles,
                                            FileSourceLocator locator)

onSeveralExperimentalRolesFound.

Specified by:

onSeveralExperimentalRolesFound in interface PsiXmlParserListener

Parameters:

roles - a Collection object.

locator - a FileSourceLocator object.

onSeveralExperimentsFound

public void onSeveralExperimentsFound(Collection<Experiment> experiments,
                                      FileSourceLocator locator)

onSeveralExperimentsFound.

Specified by:

onSeveralExperimentsFound in interface PsiXmlParserListener

Parameters:

experiments - a Collection object.

locator - a FileSourceLocator object.