Package psidev.psi.mi.jami.xml.listener

Interface PsiXmlParserListener

All Superinterfaces:

MIFileParserListener

All Known Subinterfaces:

PsiXmlSource<I>, PsiXmlStreamSource<I>

All Known Implementing Classes:

AbstractPsiXmlBinarySource, AbstractPsiXmlBinaryStream, AbstractPsiXmlSource, AbstractPsiXmlStream, DefaultPsiXmlSource, DefaultPsiXmlStreamSource, LightXmlBinarySource, LightXmlBinaryStreamSource, LightXmlSource, LightXmlStreamSource, PsiXmlParserCompositeListener, PsiXmlParserLogger, XmlBinaryEvidenceSource, XmlBinaryEvidenceStreamSource, XmlBinarySource, XmlBinaryStreamSource, XmlComplexSource, XmlComplexStreamSource, XmlEvidenceSource, XmlEvidenceStreamSource, XmlModelledBinarySource, XmlModelledBinaryStreamSource, XmlModelledSource, XmlModelledStreamSource, XmlSource, XmlStreamSource

public interface PsiXmlParserListener
extends MIFileParserListener

A listener listening to events when parsing a mitab file

Since:

14/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Method Summary

Modifier and Type	Method	Description
void	onSeveralExperimentalRolesFound(Collection<CvTerm> roles, FileSourceLocator locator)	onSeveralExperimentalRolesFound.
void	onSeveralExperimentsFound(Collection<Experiment> experiments, FileSourceLocator locator)	onSeveralExperimentsFound.
void	onSeveralExpressedInOrganismFound(Collection<Organism> organisms, FileSourceLocator locator)	onSeveralExpressedInOrganismFound.
void	onSeveralHostOrganismFound(Collection<Organism> organisms, FileSourceLocator locator)	onSeveralHostOrganismFound.
void	onUnresolvedReference(XmlIdReference ref, String message)	onUnresolvedReference.

Methods inherited from interface psidev.psi.mi.jami.listener.MIFileParserListener

onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId

Method Detail

onUnresolvedReference

void onUnresolvedReference(XmlIdReference ref,
                           String message)

onUnresolvedReference.

Parameters:

ref - a XmlIdReference object.

message - a String object.

onSeveralHostOrganismFound

void onSeveralHostOrganismFound(Collection<Organism> organisms,
                                FileSourceLocator locator)

onSeveralHostOrganismFound.

Parameters:

organisms - a Collection object.

locator - a FileSourceLocator object.

onSeveralExpressedInOrganismFound

void onSeveralExpressedInOrganismFound(Collection<Organism> organisms,
                                       FileSourceLocator locator)

onSeveralExpressedInOrganismFound.

Parameters:

organisms - a Collection object.

locator - a FileSourceLocator object.

onSeveralExperimentalRolesFound

void onSeveralExperimentalRolesFound(Collection<CvTerm> roles,
                                     FileSourceLocator locator)

onSeveralExperimentalRolesFound.

Parameters:

roles - a Collection object.

locator - a FileSourceLocator object.

onSeveralExperimentsFound

void onSeveralExperimentsFound(Collection<Experiment> experiments,
                               FileSourceLocator locator)

onSeveralExperimentsFound.

Parameters:

experiments - a Collection object.

locator - a FileSourceLocator object.