Package psidev.psi.mi.jami.xml.model

Class AbstractBaseEntry<T extends Interaction>

java.lang.Object

psidev.psi.mi.jami.xml.model.Entry

psidev.psi.mi.jami.xml.model.AbstractBaseEntry<T>

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext

Direct Known Subclasses:

AbstractEntry, AbstractEntry, AbstractEntry

public abstract class AbstractBaseEntry<T extends Interaction>
extends Entry
implements com.sun.xml.bind.Locatable, FileSourceContext

Abstract class for Entry

Since:

07/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	AbstractBaseEntry.AbstractJAXBAnnotationsWrapper
static class	AbstractBaseEntry.AbstractJAXBInteractionsWrapper<T>
static class	AbstractBaseEntry.AbstractJAXBInteractorsWrapper

Constructor Summary

Constructors

Constructor	Description
AbstractBaseEntry()	Constructor for AbstractBaseEntry.

Method Summary

Modifier and Type	Method	Description
List<T>	getInteractions()	getInteractions.
List<Interactor>	getInteractors()	getInteractors.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
boolean	hasLoadedFullEntry()	hasLoadedFullEntry.
protected void	initialiseAnnotations()	initialiseAnnotations.
protected void	setAnnotationsWrapper(AbstractBaseEntry.AbstractJAXBAnnotationsWrapper wrapper)	Setter for the field annotationsWrapper.
void	setHasLoadedFullEntry(boolean hasLoadedFullEntry)	Setter for the field hasLoadedFullEntry.
protected void	setInteractionsWrapper(AbstractBaseEntry.AbstractJAXBInteractionsWrapper wrapper)	Setter for the field interactionsWrapper.
protected void	setInteractorsWrapper(AbstractBaseEntry.AbstractJAXBInteractorsWrapper wrapper)	Setter for the field interactorsWrapper.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
Locator	sourceLocation()
String	toString()	toString

Methods inherited from class psidev.psi.mi.jami.xml.model.Entry

getAnnotations, getAvailabilities, getSource, initialiseAnnotationsWith, initialiseAvailabilities, initialiseAvailabilitiesWith, setSource

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

AbstractBaseEntry

public AbstractBaseEntry()

Constructor for AbstractBaseEntry.

Method Detail

sourceLocation

public Locator sourceLocation()

Specified by:

sourceLocation in interface com.sun.xml.bind.Locatable

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

getInteractors

public List<Interactor> getInteractors()

getInteractors.

Returns:

a List object.

getInteractions

public List<T> getInteractions()

getInteractions.

Returns:

a List object.

hasLoadedFullEntry

public boolean hasLoadedFullEntry()

hasLoadedFullEntry.

Overrides:

hasLoadedFullEntry in class Entry

Returns:

a boolean.

setHasLoadedFullEntry

public void setHasLoadedFullEntry(boolean hasLoadedFullEntry)

Setter for the field hasLoadedFullEntry.

Overrides:

setHasLoadedFullEntry in class Entry

Parameters:

hasLoadedFullEntry - a boolean.

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties

setInteractorsWrapper

protected void setInteractorsWrapper(AbstractBaseEntry.AbstractJAXBInteractorsWrapper wrapper)

Setter for the field interactorsWrapper.

Parameters:

wrapper - a AbstractBaseEntry.AbstractJAXBInteractorsWrapper object.

setInteractionsWrapper

protected void setInteractionsWrapper(AbstractBaseEntry.AbstractJAXBInteractionsWrapper wrapper)

Setter for the field interactionsWrapper.

Parameters:

wrapper - a AbstractBaseEntry.AbstractJAXBInteractionsWrapper object.

setAnnotationsWrapper

protected void setAnnotationsWrapper(AbstractBaseEntry.AbstractJAXBAnnotationsWrapper wrapper)

Setter for the field annotationsWrapper.

Parameters:

wrapper - a AbstractBaseEntry.AbstractJAXBAnnotationsWrapper object.

initialiseAnnotations

protected void initialiseAnnotations()

initialiseAnnotations.

Overrides:

initialiseAnnotations in class Entry