Package psidev.psi.mi.jami.xml.model.extension.xml253

Class InteractionXrefContainer

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml253.XrefContainer

psidev.psi.mi.jami.xml.model.extension.xml253.InteractionXrefContainer

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext

public class InteractionXrefContainer
extends XrefContainer

Xref container for interactions

Since:

08/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
InteractionXrefContainer()

Method Summary

Modifier and Type	Method	Description
void	assignComplexAc(String accession)	assignComplexAc.
void	assignComplexAc(String accession, String version)	assignComplexAc.
void	assignImexId(String identifier)	assignImexId.
protected void	clearComplexAc()
protected void	clearImexId()	clearImexId.
String	getComplexAc()	Getter for the field complexAc.
String	getComplexVersion()	Getter for the field complexVersion.
Collection<Xref>	getIdentifiers()	Getter for the field identifiers.
String	getImexId()	Getter for the field imexId.
protected void	initialiseIdentifiers()	initialiseIdentifiers.
protected void	initialiseSecondaryRefs()	initialiseSecondaryRefs.
protected void	initialiseXrefs()	initialiseXrefs.
protected void	processAddedPotentialComplexAc(Xref added)
protected void	processAddedPotentialImex(Xref added)	processAddedPotentialImex.
protected void	processAddedPrimaryRef(Xref added)	processAddedPrimaryRef.
protected void	processRemovedPotentialComplexAc(Xref removed)
protected void	processRemovedPotentialImex(Xref removed)	processRemovedPotentialImex.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.XrefContainer

getJAXBSecondaryRefs, getSourceLocator, getXrefs, initialiseSecondaryResWith, initialiseXrefsWith, isEmpty, setJAXBPrimaryRef, setSourceLocator, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

InteractionXrefContainer

public InteractionXrefContainer()

Method Detail

processAddedPrimaryRef

protected void processAddedPrimaryRef(Xref added)

processAddedPrimaryRef.

Overrides:

processAddedPrimaryRef in class XrefContainer

Parameters:

added - a Xref object.

getIdentifiers

public Collection<Xref> getIdentifiers()

Getter for the field identifiers.

Returns:

a Collection object.

getImexId

public String getImexId()

Getter for the field imexId.

Returns:

a String object.

assignImexId

public void assignImexId(String identifier)

assignImexId.

Parameters:

identifier - a String object.

getComplexAc

public String getComplexAc()

Getter for the field complexAc.

Returns:

a String object.

getComplexVersion

public String getComplexVersion()

Getter for the field complexVersion.

Returns:

a String object.

assignComplexAc

public void assignComplexAc(String accession,
                            String version)

assignComplexAc.

Parameters:

accession - a String object.

version - a String object.

assignComplexAc

public void assignComplexAc(String accession)

assignComplexAc.

Parameters:

accession - a String object.

processAddedPotentialImex

protected void processAddedPotentialImex(Xref added)

processAddedPotentialImex.

Parameters:

added - a Xref object.

processRemovedPotentialImex

protected void processRemovedPotentialImex(Xref removed)

processRemovedPotentialImex.

Parameters:

removed - a Xref object.

clearImexId

protected void clearImexId()

clearImexId.

processAddedPotentialComplexAc

protected void processAddedPotentialComplexAc(Xref added)

processRemovedPotentialComplexAc

protected void processRemovedPotentialComplexAc(Xref removed)

clearComplexAc

protected void clearComplexAc()

initialiseIdentifiers

protected void initialiseIdentifiers()

initialiseIdentifiers.

initialiseXrefs

protected void initialiseXrefs()

initialiseXrefs.

Overrides:

initialiseXrefs in class XrefContainer

initialiseSecondaryRefs

protected void initialiseSecondaryRefs()

initialiseSecondaryRefs.

Overrides:

initialiseSecondaryRefs in class XrefContainer