Package psidev.psi.mi.jami.xml.model.extension.xml253

Class XmlConfidenceWrapper

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml253.XmlConfidenceWrapper

All Implemented Interfaces:

Confidence, ModelledConfidence

public class XmlConfidenceWrapper
extends Object
implements ModelledConfidence

A wrapper for confidences

Since:

11/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Confidence

AUTHOR_BASED_CONFIDENCE, AUTHOR_BASED_CONFIDENCE_MI

Constructor Summary

Constructors

Constructor	Description
XmlConfidenceWrapper(Confidence conf)	Constructor for XmlConfidenceWrapper.

Method Summary

Modifier and Type	Method	Description
Publication	getPublication()	The publication where this confidence has been reported if relevant, null otherwise.
CvTerm	getType()	Method used to compute the confidence value.
String	getValue()	The confidence value cannot be null.
void	setPublication(Publication publication)	Sets the publication of this confidence
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlConfidenceWrapper

public XmlConfidenceWrapper(Confidence conf)

Constructor for XmlConfidenceWrapper.

Parameters:

conf - a Confidence object.

Method Detail

getType

public CvTerm getType()

Method used to compute the confidence value. The confidence type is a controlled vocabulary term and it cannot be null. Ex: author-based confidence, statistical-based confidence, ...

Specified by:

getType in interface Confidence

Returns:

the confidence type

getValue

public String getValue()

The confidence value cannot be null. It can be a numerical or literal value Ex: 'high', 'low', 0.4, ...

Specified by:

getValue in interface Confidence

Returns:

the confidence value

getPublication

public Publication getPublication()

The publication where this confidence has been reported if relevant, null otherwise.

Specified by:

getPublication in interface ModelledConfidence

Returns:

the Publication where this modelledConfidence has been reported, null if no publications reported this confidence

setPublication

public void setPublication(Publication publication)

Sets the publication of this confidence

Specified by:

setPublication in interface ModelledConfidence

Parameters:

publication - : the publication

toString

public String toString()

Overrides:

toString in class Object