Package psidev.psi.mi.jami.xml.model.extension.xml253

Class XmlCooperativityEvidence

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml253.XmlCooperativityEvidence

All Implemented Interfaces:

FileSourceContext, CooperativityEvidence

public class XmlCooperativityEvidence
extends Object
implements CooperativityEvidence, FileSourceContext

Xml implementation for cooperativity evidence

Since:

15/11/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
XmlCooperativityEvidence(Experiment exp)	Constructor for XmlCooperativityEvidence.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
Collection<CvTerm>	getEvidenceMethods()	Getter for the field evidenceMethods.
Publication	getPublication()	Getter for the field publication.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
int	hashCode()
protected void	initialiseEvidenceMethods()	initialiseEvidenceMethods.
protected void	initialiseEvidenceMethodsWith(Collection<CvTerm> methods)	initialiseEvidenceMethodsWith.
void	setPublication(Publication publication)	Set the publication where the cooperativityEvidence has been described.
void	setSourceLocator(FileSourceLocator locator)	Sets the source locator
void	setSourceLocator(PsiXmlLocator locator)	Setter for the field sourceLocator.
String	toString()	toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlCooperativityEvidence

public XmlCooperativityEvidence(Experiment exp)

Constructor for XmlCooperativityEvidence.

Parameters:

exp - a Experiment object.

Method Detail

getPublication

public Publication getPublication()

Getter for the field publication.

Specified by:

getPublication in interface CooperativityEvidence

Returns:

a Publication object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator locator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

locator - : the file locator

setSourceLocator

public void setSourceLocator(PsiXmlLocator locator)

Setter for the field sourceLocator.

Parameters:

locator - a PsiXmlLocator object.

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties

initialiseEvidenceMethods

protected void initialiseEvidenceMethods()

initialiseEvidenceMethods.

initialiseEvidenceMethodsWith

protected void initialiseEvidenceMethodsWith(Collection<CvTerm> methods)

initialiseEvidenceMethodsWith.

Parameters:

methods - a Collection object.

setPublication

public void setPublication(Publication publication)

Set the publication where the cooperativityEvidence has been described.

Specified by:

setPublication in interface CooperativityEvidence

Parameters:

publication - : the publication

getEvidenceMethods

public Collection<CvTerm> getEvidenceMethods()

Getter for the field evidenceMethods.

Specified by:

getEvidenceMethods in interface CooperativityEvidence

Returns:

a Collection object.

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object