Package psidev.psi.mi.jami.xml.model.extension.xml253

Class XmlCvTerm

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlCvTerm

psidev.psi.mi.jami.xml.model.extension.xml253.XmlCvTerm

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, CvTerm

Direct Known Subclasses:

ExperimentalCvTerm

public class XmlCvTerm
extends AbstractXmlCvTerm

Xml implementation of CvTerm. Does not write annotations The JAXB binding is designed to be read-only and is not designed for writing

Since:

18/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlCvTerm

AbstractXmlCvTerm.JAXBAttributeWrapper

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.CvTerm

PSI_MI, PSI_MI_MI, PSI_MOD, PSI_MOD_MI, PSI_PAR

Constructor Summary

Constructors

Constructor	Description
XmlCvTerm()	Constructor for XmlCvTerm.
XmlCvTerm(String shortName)	Constructor for XmlCvTerm.
XmlCvTerm(String shortName, String miIdentifier)	Constructor for XmlCvTerm.
XmlCvTerm(String shortName, String fullName, String miIdentifier)	Constructor for XmlCvTerm.
XmlCvTerm(String shortName, String fullName, Xref ontologyId)	Constructor for XmlCvTerm.
XmlCvTerm(String shortName, Xref ontologyId)	Constructor for XmlCvTerm.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setJAXBNames(NamesContainer value)	setJAXBNames.
void	setJAXBXref(CvTermXrefContainer value)	setJAXBXref.
String	toString()	toString

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml253.AbstractXmlCvTerm

equals, getAnnotations, getAttributeWrapper, getFullName, getIdentifiers, getMIIdentifier, getMODIdentifier, getNamesContainer, getPARIdentifier, getShortName, getSynonyms, getXrefContainer, getXrefs, hashCode, initialiseAnnotationWrapper, setAttributeWrapper, setFullName, setMIIdentifier, setMODIdentifier, setPARIdentifier, setShortName, setSourceLocator, sourceLocation

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlCvTerm

public XmlCvTerm()

Constructor for XmlCvTerm.

XmlCvTerm

public XmlCvTerm(String shortName,
                 String miIdentifier)

Constructor for XmlCvTerm.

Parameters:

shortName - a String object.

miIdentifier - a String object.

XmlCvTerm

public XmlCvTerm(String shortName)

Constructor for XmlCvTerm.

Parameters:

shortName - a String object.

XmlCvTerm

public XmlCvTerm(String shortName,
                 String fullName,
                 String miIdentifier)

Constructor for XmlCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

miIdentifier - a String object.

XmlCvTerm

public XmlCvTerm(String shortName,
                 Xref ontologyId)

Constructor for XmlCvTerm.

Parameters:

shortName - a String object.

ontologyId - a Xref object.

XmlCvTerm

public XmlCvTerm(String shortName,
                 String fullName,
                 Xref ontologyId)

Constructor for XmlCvTerm.

Parameters:

shortName - a String object.

fullName - a String object.

ontologyId - a Xref object.

Method Detail

setJAXBNames

public void setJAXBNames(NamesContainer value)

setJAXBNames.

Overrides:

setJAXBNames in class AbstractXmlCvTerm

Parameters:

value - a NamesContainer object.

setJAXBXref

public void setJAXBXref(CvTermXrefContainer value)

setJAXBXref.

Overrides:

setJAXBXref in class AbstractXmlCvTerm

Parameters:

value - a CvTermXrefContainer object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Overrides:

getSourceLocator in class AbstractXmlCvTerm

Returns:

a FileSourceLocator object.

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class AbstractXmlCvTerm

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties