Package psidev.psi.mi.jami.xml.model.extension.xml254

Class XmlExperimentalParticipantCandidate

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlEntity<FeatureEvidence>

psidev.psi.mi.jami.xml.model.extension.xml254.XmlExperimentalParticipantCandidate

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Entity<FeatureEvidence>, ExperimentalEntity, ExperimentalParticipantCandidate, ParticipantCandidate<ExperimentalParticipantPool,FeatureEvidence>, ExtendedPsiXmlEntity<FeatureEvidence>

public class XmlExperimentalParticipantCandidate
extends AbstractXmlEntity<FeatureEvidence>
implements ExperimentalParticipantCandidate

Xml implementation of ParticipantEvidence

Since:

08/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	XmlExperimentalParticipantCandidate.JAXBFeatureWrapper

Constructor Summary

Constructors

Constructor	Description
XmlExperimentalParticipantCandidate()	Constructor for XmlExperimentalParticipantCandidate.
XmlExperimentalParticipantCandidate(Interactor interactor)	Constructor for XmlExperimentalParticipantCandidate.
XmlExperimentalParticipantCandidate(Interactor interactor, Stoichiometry stoichiometry)	Constructor for XmlExperimentalParticipantCandidate.

Method Summary

Modifier and Type	Method	Description
ExperimentalParticipantPool	getParentPool()	The participant pool parent with which the candidate is involved.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
protected void	initialiseFeatureWrapper()	initialiseFeatureWrapper.
void	processAddedFeature(FeatureEvidence feature)	processAddedFeature.
void	setJAXBFeatureWrapper(XmlExperimentalParticipantCandidate.JAXBFeatureWrapper jaxbFeatureWrapper)	setJAXBFeatureWrapper.
void	setJAXBId(int value)	setJAXBId.
void	setJAXBInteractor(DefaultXmlInteractor interactor)	setJAXBInteractor.
void	setJAXBInteractorRef(Integer value)	Sets the value of the interactorRef property.
void	setParentPool(ExperimentalParticipantPool pool)	Sets the participant pool parent.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml254.AbstractXmlEntity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getId, getInteractor, getParticipantLocator, getStoichiometry, initialiseUnspecifiedInteractor, removeAllFeatures, removeFeature, setChangeListener, setFeatureWrapper, setId, setInteractor, setSourceLocator, setStoichiometry, setStoichiometry, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Entity

addAllFeatures, addFeature, getCausalRelationships, getChangeListener, getFeatures, getInteractor, getStoichiometry, removeAllFeatures, removeFeature, setChangeListener, setInteractor, setStoichiometry, setStoichiometry

Constructor Detail

XmlExperimentalParticipantCandidate

public XmlExperimentalParticipantCandidate()

Constructor for XmlExperimentalParticipantCandidate.

XmlExperimentalParticipantCandidate

public XmlExperimentalParticipantCandidate(Interactor interactor)

Constructor for XmlExperimentalParticipantCandidate.

Parameters:

interactor - a Interactor object.

XmlExperimentalParticipantCandidate

public XmlExperimentalParticipantCandidate(Interactor interactor,
                                           Stoichiometry stoichiometry)

Constructor for XmlExperimentalParticipantCandidate.

Parameters:

interactor - a Interactor object.

stoichiometry - a Stoichiometry object.

Method Detail

setJAXBInteractor

public void setJAXBInteractor(DefaultXmlInteractor interactor)

setJAXBInteractor.

Overrides:

setJAXBInteractor in class AbstractXmlEntity<FeatureEvidence>

Parameters:

interactor - a DefaultXmlInteractor object.

setJAXBInteractorRef

public void setJAXBInteractorRef(Integer value)

Sets the value of the interactorRef property.

Overrides:

setJAXBInteractorRef in class AbstractXmlEntity<FeatureEvidence>

Parameters:

value - allowed object is Integer

setJAXBId

public void setJAXBId(int value)

setJAXBId.

Parameters:

value - a int.

setJAXBFeatureWrapper

public void setJAXBFeatureWrapper(XmlExperimentalParticipantCandidate.JAXBFeatureWrapper jaxbFeatureWrapper)

setJAXBFeatureWrapper.

Parameters:

jaxbFeatureWrapper - a XmlExperimentalParticipantCandidate.JAXBFeatureWrapper object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Overrides:

getSourceLocator in class AbstractXmlEntity<FeatureEvidence>

Returns:

a FileSourceLocator object.

processAddedFeature

public void processAddedFeature(FeatureEvidence feature)

processAddedFeature.

Overrides:

processAddedFeature in class AbstractXmlEntity<FeatureEvidence>

Parameters:

feature - a F object.

initialiseFeatureWrapper

protected void initialiseFeatureWrapper()

initialiseFeatureWrapper.

Overrides:

initialiseFeatureWrapper in class AbstractXmlEntity<FeatureEvidence>

getParentPool

public ExperimentalParticipantPool getParentPool()

The participant pool parent with which the candidate is involved. It can be null if the participant candidate is not part of any participant pool. It can happen if the participant candidate has been removed from a participant pool and is now invalid.

Specified by:

getParentPool in interface ParticipantCandidate<ExperimentalParticipantPool,FeatureEvidence>

Returns:

the participant pool parent

setParentPool

public void setParentPool(ExperimentalParticipantPool pool)

Sets the participant pool parent.

Specified by:

setParentPool in interface ParticipantCandidate<ExperimentalParticipantPool,FeatureEvidence>

Parameters:

pool - : participant pool