Package psidev.psi.mi.jami.xml.model.extension.xml300

Class AbstractXmlAnnotation

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlAnnotation

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Annotation

Direct Known Subclasses:

DefaultXmlAnnotation, XmlAnnotation

public abstract class AbstractXmlAnnotation
extends Object
implements Annotation, FileSourceContext, com.sun.xml.bind.Locatable

Xml implementation of an Annotation The JAXB binding is designed to be read-only and is not designed for writing

Since:

18/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
protected Locator	locator

Fields inherited from interface psidev.psi.mi.jami.model.Annotation

AUTHOR, AUTHOR_MI, BIPARTITE_EXPANSION, BIPARTITE_EXPANSION_MI, CAUTION, CAUTION_MI, CLUSTERED, CLUSTERED_MI, COMMENT, COMMENT_MI, COMPLEX_EXPANSION, COMPLEX_EXPANSION_MI, COMPLEX_PROPERTIES, COMPLEX_PROPERTIES_MI, CONTACT_EMAIL, CONTACT_EMAIL_MI, CURATION_DEPTH, CURATION_DEPTH_MI, EVIDENCE, EVIDENCE_MI, EXP_MODIFICATION, EXP_MODIFICATION_MI, EXPERIMENTALLY_OBSERVED, EXPERIMENTALLY_OBSERVED_MI, FIGURE_LEGEND, FIGURE_LEGEND_MI, FULL_COVERAGE, FULL_COVERAGE_MI, IMEX_CURATION, IMEX_CURATION_MI, IMPORTED, IMPORTED_MI, INTERNALLY_CURATED, INTERNALLY_CURATED_MI, MATRIX_EXPANSION, MATRIX_EXPANSION_MI, MIMIX_CURATION, MIMIX_CURATION_MI, NUCLEIC_ACID_PROTEIN, NUCLEIC_ACID_PROTEIN_MI, PARTIAL_COVERAGE, PARTIAL_COVERAGE_MI, POSTAL_ADDRESS, PREDICTED, PREDICTED_MI, PROTEIN_PROTEIN, PROTEIN_PROTEIN_MI, PUBLICATION_JOURNAL, PUBLICATION_JOURNAL_MI, PUBLICATION_TITLE, PUBLICATION_TITLE_MI, PUBLICATION_YEAR, PUBLICATION_YEAR_MI, RAPID_CURATION, RAPID_CURATION_MI, SEARCH_URL, SEARCH_URL_MI, SMALL_MOLECULE_PROTEIN, SMALL_MOLECULE_PROTEIN_MI, SPOKE_EXPANSION, SPOKE_EXPANSION_MI, TEXT_MINING, TEXT_MINING_MI, URL, URL_MI, VALIDATION_REGEXP, VALIDATION_REGEXP_MI

Constructor Summary

Constructors

Constructor	Description
AbstractXmlAnnotation()	Constructor for AbstractXmlAnnotation.
AbstractXmlAnnotation(CvTerm topic)	Constructor for AbstractXmlAnnotation.
AbstractXmlAnnotation(CvTerm topic, String value)	Constructor for AbstractXmlAnnotation.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
CvTerm	getTopic()	Getter for the field topic.
String	getValue()	Getter for the field value.
int	hashCode()
void	setJAXBName(String value)	Sets the value of the name property.
void	setJAXBNameAc(String value)	Sets the value of the nameAc property.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
void	setValue(String value)	Set the value of this annotation.
Locator	sourceLocation()
String	toString()	toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

locator

protected Locator locator

Constructor Detail

AbstractXmlAnnotation

public AbstractXmlAnnotation()

Constructor for AbstractXmlAnnotation.

AbstractXmlAnnotation

public AbstractXmlAnnotation(CvTerm topic,
                             String value)

Constructor for AbstractXmlAnnotation.

Parameters:

topic - a CvTerm object.

value - a String object.

AbstractXmlAnnotation

public AbstractXmlAnnotation(CvTerm topic)

Constructor for AbstractXmlAnnotation.

Parameters:

topic - a CvTerm object.

Method Detail

getTopic

public CvTerm getTopic()

Getter for the field topic.

Specified by:

getTopic in interface Annotation

Returns:

a CvTerm object.

getValue

public String getValue()

Getter for the field value.

Specified by:

getValue in interface Annotation

Returns:

a String object.

setValue

public void setValue(String value)

Set the value of this annotation.

Specified by:

setValue in interface Annotation

Parameters:

value - : the value

setJAXBName

public void setJAXBName(String value)

Sets the value of the name property.

Parameters:

value - allowed object is String

setJAXBNameAc

public void setJAXBNameAc(String value)

Sets the value of the nameAc property.

Parameters:

value - allowed object is String

sourceLocation

public Locator sourceLocation()

Specified by:

sourceLocation in interface com.sun.xml.bind.Locatable

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties