| AbstractPsiXmlInteraction<T extends Participant> |
Abstract class for xml interactions implementing ExtendedPsiXmlInteraction interface
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| AbstractPsiXmlInteraction.JAXBInferredInteractionWrapper |
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| AbstractXmlAnnotation |
Xml implementation of an Annotation
The JAXB binding is designed to be read-only and is not designed for writing
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| AbstractXmlBasicInteraction |
Xml implementation of interaction
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| AbstractXmlBasicInteraction.JAXBParticipantWrapper |
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| AbstractXmlComplex |
Xml implementation for complex
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| AbstractXmlConfidence |
abstract Xml implementation of confidence
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| AbstractXmlCooperativeEffect |
Abstract class for XML 3.0 cooperative effects
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| AbstractXmlCooperativeEffect.JAXBAffectedInteractionRefWrapper |
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| AbstractXmlCooperativeEffect.JAXBAttributeWrapper |
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| AbstractXmlCooperativeEffect.JAXBCooperativityEvidenceWrapper |
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| AbstractXmlCvTerm |
Abstract cv term
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| AbstractXmlCvTerm.JAXBAttributeWrapper |
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| AbstractXmlEntity<F extends Feature> |
Abstract class for XmlEntity
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| AbstractXmlEntity.JAXBFeatureWrapper<F extends Feature> |
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| AbstractXmlExperiment |
Xml im
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| AbstractXmlExperiment.JAXBAttributeWrapper |
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| AbstractXmlExperiment.JAXBConfidenceWrapper |
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| AbstractXmlExperiment.JAXBHostOrganismWrapper |
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| AbstractXmlExperiment.JAXBVariableParameterWrapper |
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| AbstractXmlFeature<P extends Entity,F extends Feature> |
Abstract class for Xml features
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| AbstractXmlFeature.JAXBAttributeWrapper |
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| AbstractXmlFeature.JAXBRangeWrapper |
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| AbstractXmlInteraction<T extends Participant> |
Abstract class for xml interactions
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| AbstractXmlInteraction.JAXBAttributeWrapper |
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| AbstractXmlInteraction.JAXBParticipantWrapper<T extends Participant> |
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| AbstractXmlInteractionEvidence |
Xml implementation of InteractionEvidence
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| AbstractXmlInteractionEvidence.JAXBConfidenceWrapper |
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| AbstractXmlInteractionEvidence.JAXBExperimentWrapper |
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| AbstractXmlInteractionEvidence.JAXBParameterWrapper |
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| AbstractXmlInteractionEvidence.JAXBParticipantWrapper |
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| AbstractXmlInteractor |
The Xml implementation of Interactor
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| AbstractXmlInteractor.JAXBAttributeWrapper |
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| AbstractXmlModelledInteraction |
Xml implementation of ModelledInteraction
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| AbstractXmlModelledInteraction.JAXBConfidenceWrapper |
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| AbstractXmlModelledInteraction.JAXBExperimentWrapper |
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| AbstractXmlModelledInteraction.JAXBParameterWrapper |
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| AbstractXmlModelledInteraction.JAXBParticipantWrapper |
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| AbstractXmlParameter |
Abstract Xml implementation of Parameter
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| AbstractXmlParticipant<I extends Interaction,F extends Feature> |
Abstract class for XmlParticipant
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| AbstractXmlParticipant.JAXBAttributeWrapper |
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| AbstractXmlParticipant.JAXBInteractorCandidateWrapper<I extends Interaction,F extends Feature,P extends ParticipantCandidate> |
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| AbstractXmlParticipantPool<I extends Interaction,F extends Feature,P extends ParticipantCandidate> |
Abstract class for XML Participant pool
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| AbstractXmlPosition |
Abstract class for XmlPosition
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| AbstractXmlSource |
Desciption of the source of the entry, usually an organisation
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| AbstractXmlSource.JAXBAttributeWrapper |
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| Availability |
A text describing the availability of data, e.g.
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| BibRef |
Xml implementation of a Publication
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| BibRef.JAXBAttributeWrapper |
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| BindingFeatures |
Class that wraps a list of linkedFeatures which all bind together
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| ComplexNamesContainer |
A container for aliases, shortname and fullname
The JAXB binding is designed to be read-only and is not designed for writing
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| CvTermXrefContainer |
Container for both xrefs and identifiers in a CvTerm
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| DefaultAvailability |
A text describing the availability of data, e.g.
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| DefaultXmlAnnotation |
Xml implementation of an Annotation
The JAXB binding is designed to be read-only and is not designed for writing
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| DefaultXmlBasicInteraction |
Xml implementation of interaction
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| DefaultXmlComplex |
Xml implementation for complex
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| DefaultXmlExperiment |
Xml im
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| DefaultXmlInteractionEvidence |
Xml implementation of InteractionEvidence
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| DefaultXmlInteractor |
The Xml implementation of Interactor
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| DefaultXmlModelledInteraction |
Xml implementation of ModelledInteraction
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| DefaultXmlSource |
Desciption of the source of the entry, usually an organisation
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| ExperimentalCvTerm |
This elements is controlled by the PSI-MI controlled vocabulary
"experimentalPreparation", root term id MI:0346.
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| ExperimentalCvTerm.JAXBExperimentRefWrapper |
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| ExperimentalInteractor |
Java class for experimentalInteractor complex type.
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| ExperimentalInteractor.JAXBExperimentRefWrapper |
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| ExperimentXrefContainer |
Xref container for Experiment
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| FeatureXrefContainer |
Xref container for Feature
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| HostOrganism |
The experiment/participant host organism
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| HostOrganism.JAXBExperimentRefWrapper |
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| InferredInteraction |
Java class for inferredInteraction complex type.
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| InferredInteraction.JAXBExperimentRefWrapper |
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| InferredInteractionParticipant |
Participant of the inferred interaction.
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| InteractionXrefContainer |
Xref container for interactions
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| InteractorXrefContainer |
Xref container for interactors
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| NamesContainer |
A container for aliases, shortname and fullname
The JAXB binding is designed to be read-only and is not designed for writing
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| PublicationXrefContainer |
Xref container for a Publication
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| XmlAlias |
Xml implementation of an Alias.
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| XmlAllostery |
XML 3.0 implementation of Allostery
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| XmlAnnotation |
Xml implementation of an Annotation
The JAXB binding is designed to be read-only and is not designed for writing
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| XmlBasicInteraction |
Xml implementation of interaction
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| XmlBasicInteractionComplexWrapper |
Wrapper of basic interactions
If we add new modelled participants/remove participants, they will be added/removed from the list of participants of the
wrapped interaction.
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| XmlBioactiveEntity |
Xml implementation of BioactiveEntity
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| XmlCausalRelationship |
XML 3.0 implementation of causal relationship
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| XmlComplex |
Xml implementation of ModelledInteraction
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| XmlConfidence |
Xml implementation of confidence
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| XmlConfidence.JAXBExperimentRefWrapper |
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| XmlConfidenceWrapper |
A wrapper for confidences
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| XmlCooperativityEvidence |
Xml 3.0 implementation for cooperativity evidence
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| XmlCooperativityEvidence.JAXBEvidenceMethodWrapper |
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| XmlCvTerm |
Xml implementation of CvTerm.
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| XmlExperiment |
Xml 3.0 implementation of experiment
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| XmlExperimentalParticipantCandidate |
Xml implementation of ParticipantEvidence
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| XmlExperimentalParticipantCandidate.JAXBFeatureWrapper |
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| XmlExperimentalParticipantCandidateWrapper |
Wrapper for Xml participants candidates
Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
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| XmlExperimentalParticipantPool |
Xml implementation of participant pool
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| XmlExperimentalParticipantPoolWrapper |
Wrapper for Xml participants pools
Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
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| XmlFeature |
Simple Xml implementation of a Feature
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| XmlFeatureEvidence |
Xml implementation of a Feature
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| XmlFeatureEvidence.JAXBExperimentRefWrapper |
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| XmlFeatureEvidence.JAXBParameterWrapper |
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| XmlFeatureEvidenceWrapper |
Xml wrapper for feature evidences.
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| XmlFeatureModificationEffector |
Xml implementation of feature modification effector
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| XmlFeatureWrapper |
Xml wrapper for basic features
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| XmlGene |
Xml implementation of a Gene
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| XmlInteractionEvidence |
Xml implementation of InteractionEvidence
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| XmlInteractionEvidence.JAXBCausalRelationshipWrapper |
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| XmlInteractionEvidence.JAXBExperimentWrapper |
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| XmlInteractionEvidence.JAXBVariableParameterValueSetWrapper |
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| XmlInteractionEvidenceComplexWrapper |
Xml wrapper for interaction evidences used as complex
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| XmlInteractor |
The Xml implementation of Interactor
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| XmlInteractorPool |
Xml implementation for InteractorSet
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| XmlInterval |
Xml implementation of a position which is an interval
The JAXB binding is designed to be read-only and is not designed for writing
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| XmlModelledConfidence |
Xml 3.0 implementation of ModelledConfidence
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| XmlModelledFeature |
The xml implementation of a modelledFeature
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| XmlModelledInteraction |
Xml 3.0.0 implementation of ModelledInteraction
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| XmlModelledInteraction.JAXBAttributeWrapper |
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| XmlModelledInteraction.JAXBBindingFeaturesWrapper |
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| XmlModelledInteraction.JAXBCausalRelationshipWrapper |
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| XmlModelledInteraction.JAXBConfidenceWrapper |
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| XmlModelledInteraction.JAXBCooperativeEffectWrapper |
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| XmlModelledInteraction.JAXBParameterWrapper |
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| XmlModelledInteraction.JAXBParticipantWrapper |
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| XmlModelledInteractionComplexWrapper |
Wrapper for complexes that were loaded as abstract interactions
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| XmlModelledParameter |
Xml 3.0 implementation of ModelledParameter
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| XmlModelledParticipant |
XML implementation of ModelledParticipant
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| XmlModelledParticipant.JAXBFeatureWrapper |
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| XmlModelledParticipant.JAXBInteractorCandidatesWrapper |
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| XmlModelledParticipantCandidate |
XML implementation of ModelledParticipantCandidate
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| XmlModelledParticipantCandidate.JAXBFeatureWrapper |
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| XmlModelledParticipantPool |
Xml implementation of participant pool
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| XmlMolecule |
Xml implementation of molecule
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| XmlMoleculeEffector |
XML implementation of allosteric molecule effector
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| XmlNucleicAcid |
Xml implementation of Nucleic acid
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| XmlOpenCvTerm |
Xml implementation of CvTerm.
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| XmlOrganism |
Xml implementation of an organism
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| XmlParameter |
Xml implementation of Parameter
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| XmlParameterWrapper |
Xml parameter wrapper
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| XmlParticipant |
Xml implementation of a simple participant
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| XmlParticipant.JAXBFeatureWrapper |
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| XmlParticipantCandidateWrapper |
Wrapper for XmlParticipantCandidate so it implements ModelledParticipantCanidate
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| XmlParticipantEvidence |
Xml implementation of ParticipantEvidence
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| XmlParticipantEvidence.JAXBConfidenceWrapper |
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| XmlParticipantEvidence.JAXBExperimentalInteractorWrapper |
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| XmlParticipantEvidence.JAXBExperimentalPreparationWrapper |
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| XmlParticipantEvidence.JAXBExperimentalRoleWrapper |
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| XmlParticipantEvidence.JAXBFeatureWrapper |
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| XmlParticipantEvidence.JAXBHostOrganismWrapper |
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| XmlParticipantEvidence.JAXBInteractorCandidatesWrapper |
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| XmlParticipantEvidence.JAXBParameterWrapper |
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| XmlParticipantEvidence.JAXBParticipantIdentificationWrapper |
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| XmlParticipantEvidenceWrapper |
Wrapper for Xml participants
Addeding new modelled feature to this participant will not add new feature evidences to the wrapped participant evidence as they are incompatibles.
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| XmlParticipantPoolWrapper |
Wrapper for XmlParticipant
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| XmlParticipantWrapper |
Wrapper for XmlParticipant
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| XmlPolymer |
Xml implementation of Polymer
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| XmlPosition |
Xml implementation of a simple Position
The JAXB binding is designed to be read-only and is not designed for writing
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| XmlPreAssembly |
Xml 3.0 implementation of preassembly
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| XmlProtein |
Xml implementation of protein
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| XmlRange |
Xml implementation of Range
The JAXB binding is designed to be read-only and is not designed for writing
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| XmlResultingSequence |
Xml implementation of resulting sequence for XML 3.0
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| XmlSource |
Desciption of the source of the entry, usually an organisation
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| XmlStoichiometryRange |
Xml 3.0 implementation of stoichiometry range values
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| XmlVariableParameter |
XML 3.0 implementation of variable parameter
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| XmlVariableParameter.JAXBVariableValueWrapper |
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| XmlVariableParameterValue |
XML 3.0 implementation of variable parameter value
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| XmlVariableParameterValueSet |
XML 3.0 implementation of variable parameter value set
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| XmlXref |
Refers to a unique object in an external database.
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| XmlXref.JAXBAttributeWrapper |
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| XrefContainer |
Xref container in XML implementation
The JAXB binding is designed to be read-only and is not designed for writing
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