Package psidev.psi.mi.jami.xml.model.extension.xml300

Class HostOrganism

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.XmlOrganism

psidev.psi.mi.jami.xml.model.extension.xml300.HostOrganism

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Organism

public class HostOrganism
extends XmlOrganism

The experiment/participant host organism

Since:

22/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	HostOrganism.JAXBExperimentRefWrapper

Constructor Summary

Constructors

Constructor	Description
HostOrganism()	Constructor for HostOrganism.
HostOrganism(int taxId)	Constructor for HostOrganism.
HostOrganism(int taxId, String commonName)	Constructor for HostOrganism.
HostOrganism(int taxId, String commonName, String scientificName)	Constructor for HostOrganism.
HostOrganism(int taxId, String commonName, String scientificName, CvTerm cellType, CvTerm tissue, CvTerm compartment)	Constructor for HostOrganism.
HostOrganism(int taxId, String commonName, CvTerm cellType, CvTerm tissue, CvTerm compartment)	Constructor for HostOrganism.
HostOrganism(int taxId, CvTerm cellType, CvTerm tissue, CvTerm compartment)	Constructor for HostOrganism.

Method Summary

Modifier and Type	Method	Description
Collection<Experiment>	getExperiments()	getExperiments.
void	setJAXBExperimentRefWrapper(HostOrganism.JAXBExperimentRefWrapper wrapper)	Gets the value of the experimentRefList property.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.XmlOrganism

equals, getAliases, getCellType, getCommonName, getCompartment, getScientificName, getSourceLocator, getTaxId, getTissue, hashCode, setCellType, setCommonName, setCompartment, setJAXBCellType, setJAXBCompartment, setJAXBNames, setJAXBTaxId, setJAXBTissue, setScientificName, setSourceLocator, setTaxId, setTissue, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

HostOrganism

public HostOrganism()

Constructor for HostOrganism.

HostOrganism

public HostOrganism(int taxId)

Constructor for HostOrganism.

Parameters:

taxId - a int.

HostOrganism

public HostOrganism(int taxId,
                    String commonName)

Constructor for HostOrganism.

Parameters:

taxId - a int.

commonName - a String object.

HostOrganism

public HostOrganism(int taxId,
                    String commonName,
                    String scientificName)

Constructor for HostOrganism.

Parameters:

taxId - a int.

commonName - a String object.

scientificName - a String object.

HostOrganism

public HostOrganism(int taxId,
                    CvTerm cellType,
                    CvTerm tissue,
                    CvTerm compartment)

Constructor for HostOrganism.

Parameters:

taxId - a int.

cellType - a CvTerm object.

tissue - a CvTerm object.

compartment - a CvTerm object.

HostOrganism

public HostOrganism(int taxId,
                    String commonName,
                    CvTerm cellType,
                    CvTerm tissue,
                    CvTerm compartment)

Constructor for HostOrganism.

Parameters:

taxId - a int.

commonName - a String object.

cellType - a CvTerm object.

tissue - a CvTerm object.

compartment - a CvTerm object.

HostOrganism

public HostOrganism(int taxId,
                    String commonName,
                    String scientificName,
                    CvTerm cellType,
                    CvTerm tissue,
                    CvTerm compartment)

Constructor for HostOrganism.

Parameters:

taxId - a int.

commonName - a String object.

scientificName - a String object.

cellType - a CvTerm object.

tissue - a CvTerm object.

compartment - a CvTerm object.

Method Detail

getExperiments

public Collection<Experiment> getExperiments()

getExperiments.

Returns:

a Collection object.

setJAXBExperimentRefWrapper

public void setJAXBExperimentRefWrapper(HostOrganism.JAXBExperimentRefWrapper wrapper)

Gets the value of the experimentRefList property.

Parameters:

wrapper - a HostOrganism.JAXBExperimentRefWrapper object.