Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XmlModelledFeature

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlFeature<ModelledEntity,ModelledFeature>

psidev.psi.mi.jami.xml.model.extension.xml300.XmlModelledFeature

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Feature<ModelledEntity,ModelledFeature>, ModelledFeature, ExtendedPsiXmlFeature<ModelledEntity,ModelledFeature>

public class XmlModelledFeature
extends AbstractXmlFeature<ModelledEntity,ModelledFeature>
implements ModelledFeature

The xml implementation of a modelledFeature

Since:

25/07/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlFeature

AbstractXmlFeature.JAXBAttributeWrapper, AbstractXmlFeature.JAXBRangeWrapper

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Feature

ALLOSTERIC_PTM, ALLOSTERIC_PTM_MI, BINDING_SITE, BINDING_SITE_MI, BIOLOGICAL_FEATURE, BIOLOGICAL_FEATURE_MI, DECREASING_PTM, DECREASING_PTM_MI, DIRECT_BINDING, DIRECT_BINDING_MI, DISRUPTING_PTM, DISRUPTING_PTM_MI, EXPERIMENTAL_FEATURE, EXPERIMENTAL_FEATURE_MI, INCREASING_PTM, INCREASING_PTM_MI, MUTATION, MUTATION_MI, OBSERVED_PTM, OBSERVED_PTM_MI, PREREQUISITE_PTM, PREREQUISITE_PTM_MI, RESULTING_CLEAVAGE, RESULTING_CLEAVAGE_MI, RESULTING_PTM, RESULTING_PTM_MI, SUFFICIENT_BINDING, SUFFICIENT_BINDING_MI, VARIANT, VARIANT_MI

Constructor Summary

Constructors

Constructor	Description
XmlModelledFeature()	Constructor for XmlModelledFeature.
XmlModelledFeature(String shortName, String fullName)	Constructor for XmlModelledFeature.
XmlModelledFeature(String shortName, String fullName, String interpro)	Constructor for XmlModelledFeature.
XmlModelledFeature(String shortName, String fullName, CvTerm type)	Constructor for XmlModelledFeature.
XmlModelledFeature(String shortName, String fullName, CvTerm type, String interpro)	Constructor for XmlModelledFeature.
XmlModelledFeature(CvTerm type)	Constructor for XmlModelledFeature.
XmlModelledFeature(CvTerm type, String interpro)	Constructor for XmlModelledFeature.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setJAXBAttributeWrapper(AbstractXmlFeature.JAXBAttributeWrapper jaxbAttributeWrapper)	setJAXBAttributeWrapper.
void	setJAXBFeatureRole(XmlCvTerm role)	setJAXBFeatureRole.
void	setJAXBId(int id)	Gets the value of the id property.
void	setJAXBNames(NamesContainer value)	Sets the value of the names property.
void	setJAXBRangeWrapper(AbstractXmlFeature.JAXBRangeWrapper jaxbRangeWrapper)	setJAXBRangeWrapper.
void	setJAXBType(XmlCvTerm type)	setJAXBType.
void	setJAXBXref(FeatureXrefContainer value)	Sets the value of the xref property.

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlFeature

getAliases, getAnnotations, getFullName, getId, getIdentifiers, getInterpro, getJAXBAttributeWrapper, getJAXBRangeWrapper, getLinkedFeatures, getParticipant, getRanges, getRole, getShortName, getType, getXrefs, initialiseAnnotationWrapper, initialiseLinkedFeatures, initialiseRangeWrapper, initialiseRole, setFullName, setId, setInterpro, setParticipant, setParticipantAndAddFeature, setRole, setShortName, setSourceLocator, setType, sourceLocation, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.model.Feature

getAliases, getAnnotations, getFullName, getIdentifiers, getInterpro, getLinkedFeatures, getParticipant, getRanges, getRole, getShortName, getType, getXrefs, setFullName, setInterpro, setParticipant, setParticipantAndAddFeature, setRole, setShortName, setType

Constructor Detail

XmlModelledFeature

public XmlModelledFeature()

Constructor for XmlModelledFeature.

XmlModelledFeature

public XmlModelledFeature(String shortName,
                          String fullName)

Constructor for XmlModelledFeature.

Parameters:

shortName - a String object.

fullName - a String object.

XmlModelledFeature

public XmlModelledFeature(CvTerm type)

Constructor for XmlModelledFeature.

Parameters:

type - a CvTerm object.

XmlModelledFeature

public XmlModelledFeature(String shortName,
                          String fullName,
                          CvTerm type)

Constructor for XmlModelledFeature.

Parameters:

shortName - a String object.

fullName - a String object.

type - a CvTerm object.

XmlModelledFeature

public XmlModelledFeature(String shortName,
                          String fullName,
                          String interpro)

Constructor for XmlModelledFeature.

Parameters:

shortName - a String object.

fullName - a String object.

interpro - a String object.

XmlModelledFeature

public XmlModelledFeature(CvTerm type,
                          String interpro)

Constructor for XmlModelledFeature.

Parameters:

type - a CvTerm object.

interpro - a String object.

XmlModelledFeature

public XmlModelledFeature(String shortName,
                          String fullName,
                          CvTerm type,
                          String interpro)

Constructor for XmlModelledFeature.

Parameters:

shortName - a String object.

fullName - a String object.

type - a CvTerm object.

interpro - a String object.

Method Detail

setJAXBNames

public void setJAXBNames(NamesContainer value)

Sets the value of the names property.

Overrides:

setJAXBNames in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Parameters:

value - allowed object is NamesContainer

setJAXBXref

public void setJAXBXref(FeatureXrefContainer value)

Sets the value of the xref property.

Overrides:

setJAXBXref in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Parameters:

value - allowed object is FeatureXrefContainer

setJAXBType

public void setJAXBType(XmlCvTerm type)

setJAXBType.

Overrides:

setJAXBType in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Parameters:

type - a XmlCvTerm object.

setJAXBAttributeWrapper

public void setJAXBAttributeWrapper(AbstractXmlFeature.JAXBAttributeWrapper jaxbAttributeWrapper)

setJAXBAttributeWrapper.

Overrides:

setJAXBAttributeWrapper in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Parameters:

jaxbAttributeWrapper - a AbstractXmlFeature.JAXBAttributeWrapper object.

setJAXBRangeWrapper

public void setJAXBRangeWrapper(AbstractXmlFeature.JAXBRangeWrapper jaxbRangeWrapper)

setJAXBRangeWrapper.

Overrides:

setJAXBRangeWrapper in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Parameters:

jaxbRangeWrapper - a AbstractXmlFeature.JAXBRangeWrapper object.

setJAXBId

public void setJAXBId(int id)

Gets the value of the id property.

Parameters:

id - a int.

setJAXBFeatureRole

public void setJAXBFeatureRole(XmlCvTerm role)

setJAXBFeatureRole.

Overrides:

setJAXBFeatureRole in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Parameters:

role - a XmlCvTerm object.

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Overrides:

getSourceLocator in class AbstractXmlFeature<ModelledEntity,ModelledFeature>

Returns:

a FileSourceLocator object.