java.lang.Object
- psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
- - psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteractor
  - - psidev.psi.mi.jami.xml.model.extension.xml300.DefaultXmlInteractor
    - - psidev.psi.mi.jami.xml.model.extension.xml300.XmlMolecule

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Interactor, Molecule, ExtendedPsiXmlInteractor

Direct Known Subclasses:

XmlPolymer
```
public class XmlMolecule
extends DefaultXmlInteractor
implements Molecule
```
Xml implementation of molecule
Since:
```
24/07/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary
- Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteractor
  AbstractXmlInteractor.JAXBAttributeWrapper
- Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
  AbstractBaseXmlInteractor.AbstractJAXBAttributeWrapper

Field Summary
- Fields inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
  locator
- Fields inherited from interface psidev.psi.mi.jami.model.Interactor
  UNKNOWN_INTERACTOR, UNKNOWN_INTERACTOR_MI

Constructor Summary

Constructors
Constructor	Description
`XmlMolecule()`	Constructor for XmlMolecule.
`XmlMolecule(String name)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, CvTerm type)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, CvTerm type, Organism organism)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, CvTerm type, Organism organism, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, CvTerm type, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, Organism organism)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, Organism organism, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, String fullName, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, CvTerm type)`	Constructor for XmlMolecule.
`XmlMolecule(String name, CvTerm type, Organism organism)`	Constructor for XmlMolecule.
`XmlMolecule(String name, CvTerm type, Organism organism, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, CvTerm type, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, Organism organism)`	Constructor for XmlMolecule.
`XmlMolecule(String name, Organism organism, Xref uniqueId)`	Constructor for XmlMolecule.
`XmlMolecule(String name, Xref uniqueId)`	Constructor for XmlMolecule.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

String toString()
toString
- Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteractor
  createDefaultInteractorType, initialiseAnnotationWrapper, initialiseNamesContainer, initialiseXrefContainer, setJAXBAttributeWrapper, setJAXBId, setJAXBInteractorType, setJAXBNames, setJAXBOrganism, setJAXBXref, setSequence
- Methods inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor
  getAliases, getAnnotations, getChecksums, getFullName, getId, getIdentifiers, getInteractorType, getNamesContainer, getOrganism, getPreferredIdentifier, getPreferredName, getSequence, getShortName, getSourceLocator, getXrefs, setFullName, setId, setInteractorType, setJAXBAttributeWrapper, setJAXBInteractorType, setJAXBNames, setJAXBOrganism, setNamesContainer, setOrganism, setShortName, setSourceLocation, setSourceLocator, setXrefContainer, sourceLocation
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
- Methods inherited from interface psidev.psi.mi.jami.model.Interactor
  getAliases, getAnnotations, getChecksums, getFullName, getIdentifiers, getInteractorType, getOrganism, getPreferredIdentifier, getPreferredName, getShortName, getXrefs, setFullName, setInteractorType, setOrganism, setShortName

Constructor Detail

XmlMolecule
```
public XmlMolecule()
```
Constructor for XmlMolecule.

XmlMolecule

public XmlMolecule(String name,
                   CvTerm type)

Constructor for XmlMolecule.

Parameters:: name - a String object.; type - a CvTerm object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   CvTerm type)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; type - a CvTerm object.

XmlMolecule

public XmlMolecule(String name,
                   CvTerm type,
                   Organism organism)

Constructor for XmlMolecule.

Parameters:: name - a String object.; type - a CvTerm object.; organism - a Organism object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   CvTerm type,
                   Organism organism)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; type - a CvTerm object.; organism - a Organism object.

XmlMolecule

public XmlMolecule(String name,
                   CvTerm type,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; type - a CvTerm object.; uniqueId - a Xref object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   CvTerm type,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; type - a CvTerm object.; uniqueId - a Xref object.

XmlMolecule

public XmlMolecule(String name,
                   CvTerm type,
                   Organism organism,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; type - a CvTerm object.; organism - a Organism object.; uniqueId - a Xref object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   CvTerm type,
                   Organism organism,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; type - a CvTerm object.; organism - a Organism object.; uniqueId - a Xref object.

XmlMolecule
```
public XmlMolecule(String name)
```
Constructor for XmlMolecule.

Parameters:

name - a String object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.

XmlMolecule

public XmlMolecule(String name,
                   Organism organism)

Constructor for XmlMolecule.

Parameters:: name - a String object.; organism - a Organism object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   Organism organism)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; organism - a Organism object.

XmlMolecule

public XmlMolecule(String name,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; uniqueId - a Xref object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; uniqueId - a Xref object.

XmlMolecule

public XmlMolecule(String name,
                   Organism organism,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; organism - a Organism object.; uniqueId - a Xref object.

XmlMolecule

public XmlMolecule(String name,
                   String fullName,
                   Organism organism,
                   Xref uniqueId)

Constructor for XmlMolecule.

Parameters:: name - a String object.; fullName - a String object.; organism - a Organism object.; uniqueId - a Xref object.

Method Detail
- toString
```
public String toString()
```
  toString
  
  Specified by:
  
  toString in interface FileSourceContext
  
  Overrides:
  
  toString in class AbstractBaseXmlInteractor
  
  Returns:
  
  the file source context as a String. If the source locator is not null, it should give the source locator properties

Class XmlMolecule

Nested Class Summary

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteractor

Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor

Field Summary

Fields inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor

Fields inherited from interface psidev.psi.mi.jami.model.Interactor

Constructor Summary

Method Summary

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlInteractor

Methods inherited from class psidev.psi.mi.jami.xml.model.extension.AbstractBaseXmlInteractor

Methods inherited from class java.lang.Object

Methods inherited from interface psidev.psi.mi.jami.model.Interactor

Constructor Detail

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

XmlMolecule

Method Detail

toString