XmlPreAssembly (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

java.lang.Object
- psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlCooperativeEffect
- - psidev.psi.mi.jami.xml.model.extension.xml300.XmlPreAssembly

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, CooperativeEffect, Preassembly
```
public class XmlPreAssembly
extends AbstractXmlCooperativeEffect
implements Preassembly
```
Xml 3.0 implementation of preassembly
Since:
```
15/11/13
```
Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Nested Class Summary
- Nested classes/interfaces inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlCooperativeEffect
  AbstractXmlCooperativeEffect.JAXBAffectedInteractionRefWrapper, AbstractXmlCooperativeEffect.JAXBAttributeWrapper, AbstractXmlCooperativeEffect.JAXBCooperativityEvidenceWrapper

Field Summary
- Fields inherited from interface psidev.psi.mi.jami.model.CooperativeEffect
  AFFECTED_INTERACTION, AFFECTED_INTERACTION_ID, ALLOSTERIC_DYNAMIC_CHANGE, ALLOSTERIC_DYNAMIC_CHANGE_ID, ALLOSTERIC_EFFECTOR, ALLOSTERIC_EFFECTOR_ID, ALLOSTERIC_K_RESPONSE, ALLOSTERIC_K_RESPONSE_ID, ALLOSTERIC_MOLECULE, ALLOSTERIC_MOLECULE_ID, ALLOSTERIC_PTM, ALLOSTERIC_PTM_ID, ALLOSTERIC_STRUCTURE_CHANE, ALLOSTERIC_STRUCTURE_CHANE_ID, ALLOSTERIC_V_RESPONSE, ALLOSTERIC_V_RESPONSE_ID, ALLOSTERY, ALLOSTERY_ID, ALTERED_PHYSICO_COMPATIBILITY, ALTERED_PHYSICO_COMPATIBILITY_ID, BINDING_HIDING, BINDING_HIDING_ID, COMPOSITE_BINDING, COMPOSITE_BINDING_ID, COOPERATIVE_EFFECT_VALUE, COOPERATIVE_EFFECT_VALUE_ID, EFFECT_OUTCOME, EFFECT_OUTCOME_MI, HETEROTROPIC_ALLOSTERY, HETEROTROPIC_ALLOSTERY_ID, HOMOTROPIC_ALLOSTERY, HOMOTROPIC_ALLOSTERY_ID, NEGATIVE_EFFECT, NEGATIVE_EFFECT_ID, PARTICIPANT_REF, PARTICIPANT_REF_ID, POSITIVE_EFFECT, POSITIVE_EFFECT_ID, PRE_ORGANIZATION, PRE_ORGANIZATION_ID, PREASSEMBLY, PREASSEMBLY_ID

Constructor Summary

Constructors
Constructor	Description
`XmlPreAssembly()`	Constructor for XmlPreAssembly.
`XmlPreAssembly(CvTerm outcome)`	Constructor for XmlPreAssembly.
`XmlPreAssembly(CvTerm outcome, CvTerm response)`	Constructor for XmlPreAssembly.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type Method Description

String toString()
toString
- Methods inherited from class psidev.psi.mi.jami.xml.model.extension.xml300.AbstractXmlCooperativeEffect
  addAffectedInteractionRef, getAffectedInteractions, getAnnotations, getCooperativityEvidences, getOutCome, getResponse, getSourceLocator, initialiseAffectedInteractions, initialiseAnnotations, initialiseCooperativityEvidences, setJAXBAffectedInteractionWrapper, setJAXBAttributeWrapper, setJAXBCooperativityEvidenceWrapper, setJAXBOutCome, setJAXBResponse, setOutCome, setResponse, setSourceLocation, setSourceLocator, sourceLocation
- Methods inherited from class java.lang.Object
  clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait
- Methods inherited from interface psidev.psi.mi.jami.model.CooperativeEffect
  getAffectedInteractions, getAnnotations, getCooperativityEvidences, getOutCome, getResponse, setOutCome, setResponse

- Constructor Detail
  - XmlPreAssembly
```
public XmlPreAssembly()
```
    Constructor for XmlPreAssembly.
  - XmlPreAssembly
```
public XmlPreAssembly(CvTerm outcome)
```
    Constructor for XmlPreAssembly.
    
    Parameters:
    
    outcome - a CvTerm object.
  - XmlPreAssembly
```
public XmlPreAssembly(CvTerm outcome,
                      CvTerm response)
```
    Constructor for XmlPreAssembly.
    
    Parameters:
    
    outcome - a CvTerm object.
    
    response - a CvTerm object.
- Method Detail
  - toString
```
public String toString()
```
    toString
    
    Specified by:
    
    toString in interface FileSourceContext
    
    Overrides:
    
    toString in class AbstractXmlCooperativeEffect
    
    Returns:
    
    the file source context as a String. If the source locator is not null, it should give the source locator properties