Package psidev.psi.mi.jami.xml.model.extension.xml300

Class XmlXref

java.lang.Object

psidev.psi.mi.jami.xml.model.extension.xml300.XmlXref

All Implemented Interfaces:

com.sun.xml.bind.Locatable, FileSourceContext, Xref, ExtendedPsiXmlXref

public class XmlXref
extends Object
implements ExtendedPsiXmlXref, FileSourceContext, com.sun.xml.bind.Locatable

Refers to a unique object in an external database.

Java class for dbReference complex type.

The following schema fragment specifies the expected content contained within this class. The JAXB bindings is designed to be read-only and is not designed for writing

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	XmlXref.JAXBAttributeWrapper

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Xref

CHAIN_PARENT, CHAIN_PARENT_MI, CHEBI, CHEBI_MI, COMPLEX_PORTAL, COMPLEX_PORTAL_MI, COMPLEX_PRIMARY, COMPLEX_PRIMARY_MI, DDBJ_EMBL_GENBANK, DDBJ_EMBL_GENBANK_MI, DOI, DOI_MI, ENSEMBL, ENSEMBL_GENOMES, ENSEMBL_GENOMES_MI, ENSEMBL_MI, ENTREZ_GENE, ENTREZ_GENE_MI, GO, GO_MI, IDENTITY, IDENTITY_MI, IMEX, IMEX_MI, IMEX_PRIMARY, IMEX_PRIMARY_MI, INTACT_MI, INTERACTOR_SET_QUALIFIER, INTERACTOR_SET_QUALIFIER_MI, INTERPRO, INTERPRO_MI, ISOFORM_PARENT, ISOFORM_PARENT_MI, METHOD_REFERENCE, METHOD_REFERENCE_MI, PRIMARY, PRIMARY_MI, PUBMED, PUBMED_MI, REFSEQ, REFSEQ_MI, RESID, RESID_MI, SECONDARY, SECONDARY_MI, SEE_ALSO, SEE_ALSO_MI, SO, SO_MI, UNIPROTKB, UNIPROTKB_MI, UNIPROTKB_SWISSPROT, UNIPROTKB_SWISSPROT_MI, UNIPROTKB_TREMBL, UNIPROTKB_TREMBL_MI

Constructor Summary

Constructors

Constructor	Description
XmlXref()	Constructor for XmlXref.
XmlXref(CvTerm database, String id)	Constructor for XmlXref.
XmlXref(CvTerm database, String id, String version)	Constructor for XmlXref.
XmlXref(CvTerm database, String id, String version, CvTerm qualifier)	Constructor for XmlXref.
XmlXref(CvTerm database, String id, CvTerm qualifier)	Constructor for XmlXref.

Method Summary

Modifier and Type	Method	Description
boolean	equals(Object o)
List<Annotation>	getAnnotations()	getAnnotations.
CvTerm	getDatabase()	Getter for the field database.
String	getId()	Getter for the field id.
CvTerm	getQualifier()	Getter for the field qualifier.
String	getSecondary()	Getter for the field secondary.
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
String	getVersion()	Getter for the field version.
int	hashCode()
void	setJAXBAttributeWrapper(XmlXref.JAXBAttributeWrapper wrapper)	Gets the value of the attributeList property.
void	setJAXBDb(String value)	Sets the value of the db property.
void	setJAXBDbAc(String value)	Sets the value of the dbAc property.
void	setJAXBId(String value)	Sets the value of the id property.
void	setJAXBRefType(String value)	Sets the value of the refType property.
void	setJAXBRefTypeAc(String value)	Sets the value of the refTypeAc property.
void	setJAXBVersion(String value)	Sets the value of the version property.
void	setSecondary(String value)	setSecondary.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
Locator	sourceLocation()
String	toString()	toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

XmlXref

public XmlXref()

Constructor for XmlXref.

XmlXref

public XmlXref(CvTerm database,
               String id,
               CvTerm qualifier)

Constructor for XmlXref.

Parameters:

database - a CvTerm object.

id - a String object.

qualifier - a CvTerm object.

XmlXref

public XmlXref(CvTerm database,
               String id,
               String version,
               CvTerm qualifier)

Constructor for XmlXref.

Parameters:

database - a CvTerm object.

id - a String object.

version - a String object.

qualifier - a CvTerm object.

XmlXref

public XmlXref(CvTerm database,
               String id,
               String version)

Constructor for XmlXref.

Parameters:

database - a CvTerm object.

id - a String object.

version - a String object.

XmlXref

public XmlXref(CvTerm database,
               String id)

Constructor for XmlXref.

Parameters:

database - a CvTerm object.

id - a String object.

Method Detail

getDatabase

public CvTerm getDatabase()

Getter for the field database.

Specified by:

getDatabase in interface Xref

Returns:

a CvTerm object.

getId

public String getId()

Getter for the field id.

Specified by:

getId in interface Xref

Returns:

a String object.

setJAXBId

public void setJAXBId(String value)

Sets the value of the id property.

Parameters:

value - allowed object is String

getVersion

public String getVersion()

Getter for the field version.

Specified by:

getVersion in interface Xref

Returns:

a String object.

setJAXBVersion

public void setJAXBVersion(String value)

Sets the value of the version property.

Parameters:

value - allowed object is String

getQualifier

public CvTerm getQualifier()

Getter for the field qualifier.

Specified by:

getQualifier in interface Xref

Returns:

a CvTerm object.

setJAXBDb

public void setJAXBDb(String value)

Sets the value of the db property.

Parameters:

value - allowed object is String

setJAXBDbAc

public void setJAXBDbAc(String value)

Sets the value of the dbAc property.

Parameters:

value - allowed object is String

setJAXBRefType

public void setJAXBRefType(String value)

Sets the value of the refType property.

Parameters:

value - allowed object is String

setJAXBRefTypeAc

public void setJAXBRefTypeAc(String value)

Sets the value of the refTypeAc property.

Parameters:

value - allowed object is String

getSecondary

public String getSecondary()

Getter for the field secondary.

Specified by:

getSecondary in interface ExtendedPsiXmlXref

Returns:

a String object.

setSecondary

public void setSecondary(String value)

setSecondary.

Sets the value of the secondary property.

Specified by:

setSecondary in interface ExtendedPsiXmlXref

Parameters:

value - a String object.

setJAXBAttributeWrapper

public void setJAXBAttributeWrapper(XmlXref.JAXBAttributeWrapper wrapper)

Gets the value of the attributeList property.

Parameters:

wrapper - a XmlXref.JAXBAttributeWrapper object.

getAnnotations

public List<Annotation> getAnnotations()

getAnnotations.

Specified by:

getAnnotations in interface ExtendedPsiXmlXref

Returns:

a List object.

sourceLocation

public Locator sourceLocation()

Specified by:

sourceLocation in interface com.sun.xml.bind.Locatable

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

equals

public boolean equals(Object o)

Overrides:

equals in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

toString

public String toString()

toString

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class Object

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties