Package psidev.psi.mi.jami.bridges.chebi

Class CachedChebiFetcher

java.lang.Object

psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

psidev.psi.mi.jami.bridges.chebi.CachedChebiFetcher

All Implemented Interfaces:

BioactiveEntityFetcher, CachedFetcher, InteractorFetcher<BioactiveEntity>

public class CachedChebiFetcher
extends AbstractCachedFetcher
implements BioactiveEntityFetcher

A Cached version of the chebi fetcher

Since:

09/09/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields

Modifier and Type	Field	Description
static String	CHEBI_CACHE_NAME	Constant CHEBI_CACHE_NAME="chebi-cache"

Fields inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

EHCACHE_CONFIG_FILE

Constructor Summary

Constructors

Constructor	Description
CachedChebiFetcher()	Constructor for CachedChebiFetcher.

Method Summary

Modifier and Type	Method	Description
Collection<BioactiveEntity>	fetchByIdentifier(String identifier)	Takes a string identifier and returns the interactors which match.
Collection<BioactiveEntity>	fetchByIdentifiers(Collection<String> identifiers)	Takes a collection of string identifiers and returns the interactors which match.

Methods inherited from class psidev.psi.mi.jami.bridges.fetcher.AbstractCachedFetcher

clearCache, getFromCache, initialiseCache, initialiseCache, shutDownCache, storeInCache

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

CHEBI_CACHE_NAME

public static final String CHEBI_CACHE_NAME

Constant CHEBI_CACHE_NAME="chebi-cache"

See Also:

Constant Field Values

Constructor Detail

CachedChebiFetcher

public CachedChebiFetcher()

Constructor for CachedChebiFetcher.

Method Detail

fetchByIdentifier

public Collection<BioactiveEntity> fetchByIdentifier(String identifier)
                                              throws BridgeFailedException

Takes a string identifier and returns the interactors which match. Returns an empty collection of no entries are returned

Specified by:

fetchByIdentifier in interface InteractorFetcher<BioactiveEntity>

Parameters:

identifier - The identifier to search for.

Returns:

The proteins which match the search term. Empty if no matches.

Throws:

BridgeFailedException - A problem has been encountered when contacting the service

fetchByIdentifiers

public Collection<BioactiveEntity> fetchByIdentifiers(Collection<String> identifiers)
                                               throws BridgeFailedException

Takes a collection of string identifiers and returns the interactors which match. Returns an empty collection of no entries are returned.

Specified by:

fetchByIdentifiers in interface InteractorFetcher<BioactiveEntity>

Parameters:

identifiers - The identifiers to search for.

Returns:

The proteins which match the search term. Empty if no matches.

Throws:

BridgeFailedException - if any.