Uses of Interface
psidev.psi.mi.jami.bridges.ontologymanager.MIOntologyTermI

Packages that use MIOntologyTermI

Package	Description
psidev.psi.mi.jami.bridges.ontologymanager
psidev.psi.mi.jami.bridges.ontologymanager.impl

Uses of MIOntologyTermI in psidev.psi.mi.jami.bridges.ontologymanager

Methods in psidev.psi.mi.jami.bridges.ontologymanager that return types with arguments of type MIOntologyTermI

Modifier and Type	Method	Description
Collection<MIOntologyTermI>	MIOntologyAccess.getRootTerms()	getRootTerms.

Uses of MIOntologyTermI in psidev.psi.mi.jami.bridges.ontologymanager.impl

Classes in psidev.psi.mi.jami.bridges.ontologymanager.impl that implement MIOntologyTermI

Modifier and Type	Class	Description
class	OntologyTermWrapper	Ontology term for PSI-MI JAMI

Methods in psidev.psi.mi.jami.bridges.ontologymanager.impl that return MIOntologyTermI

Modifier and Type	Method	Description
protected MIOntologyTermI	AbstractMIOntologyAccess.createNewOntologyTerm(String identifier, String name)	createNewOntologyTerm.
MIOntologyTermI	AbstractMIOntologyAccess.getTermForAccession(String accession)

Methods in psidev.psi.mi.jami.bridges.ontologymanager.impl that return types with arguments of type MIOntologyTermI

Modifier and Type	Method	Description
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getAllChildren(MIOntologyTermI term)	getAllChildren.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getAllParents(MIOntologyTermI term)	getAllParents.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getDirectChildren(MIOntologyTermI term)	getDirectChildren.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getDirectParents(MIOntologyTermI term)	getDirectParents.
Collection<MIOntologyTermI>	AbstractMIOntologyAccess.getRootTerms()	getRootTerms.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getValidTerms(String accession, boolean allowChildren, boolean useTerm)	Method that is used by the validator to determine a Set of Ontology terms that are valid terms for a particular rule.

Methods in psidev.psi.mi.jami.bridges.ontologymanager.impl with parameters of type MIOntologyTermI

Modifier and Type	Method	Description
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getAllChildren(MIOntologyTermI term)	getAllChildren.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getAllParents(MIOntologyTermI term)	getAllParents.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getDirectChildren(MIOntologyTermI term)	getDirectChildren.
Set<MIOntologyTermI>	AbstractMIOntologyAccess.getDirectParents(MIOntologyTermI term)	getDirectParents.
boolean	AbstractMIOntologyAccess.isObsolete(MIOntologyTermI term)	isObsolete.