Uses of Class psidev.psi.mi.jami.crosslink.extension.CsvRange (PSI :: JAMI - Java framework for molecular interactions 3.3.0 API)

Packages that use CsvRange
Package Description

psidev.psi.mi.jami.crosslink.extension.datasource

psidev.psi.mi.jami.crosslink.io.parser

psidev.psi.mi.jami.crosslink.listener

Uses of CsvRange in psidev.psi.mi.jami.crosslink.extension.datasource

Method parameters in psidev.psi.mi.jami.crosslink.extension.datasource with type arguments of type CsvRange
Modifier and Type	Method	Description
`void`	AbstractCsvSource.`onMismatchBetweenPeptideAndLinkedPositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	Event fired when the number of peptide positions is greater than one and is not the same as the number of linked positions
`void`	AbstractCsvStreamSource.`onMismatchBetweenPeptideAndLinkedPositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	Event fired when the number of peptide positions is greater than one and is not the same as the number of linked positions
`void`	CsvMixedEvidenceSource.`onMismatchBetweenPeptideAndLinkedPositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	Event fired when the number of peptide positions is greater than one and is not the same as the number of linked positions
`void`	CsvNaryEvidenceSource.`onMismatchBetweenPeptideAndLinkedPositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	Event fired when the number of peptide positions is greater than one and is not the same as the number of linked positions
`void`	AbstractCsvSource.`onMismatchBetweenRangePositionsAndProteins(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	Event fired when the number of range positions is superior to 1 and the number of proteins is also superior to 1 but does not match the number of ranges
`void`	AbstractCsvStreamSource.`onMismatchBetweenRangePositionsAndProteins(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	Event fired when the number of range positions is superior to 1 and the number of proteins is also superior to 1 but does not match the number of ranges
`void`	CsvMixedEvidenceSource.`onMismatchBetweenRangePositionsAndProteins(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	Event fired when the number of range positions is superior to 1 and the number of proteins is also superior to 1 but does not match the number of ranges
`void`	CsvNaryEvidenceSource.`onMismatchBetweenRangePositionsAndProteins(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	Event fired when the number of range positions is superior to 1 and the number of proteins is also superior to 1 but does not match the number of ranges

Uses of CsvRange in psidev.psi.mi.jami.crosslink.io.parser

Methods in psidev.psi.mi.jami.crosslink.io.parser that return types with arguments of type CsvRange
Modifier and Type	Method	Description
`protected List<CsvRange>`	AbstractCsvInteractionEvidenceParser.`parseCrossLinkingFeatures(String pepPos, String linkedPos, int lineNumber, int pepColumnNumber, int linkedColumnNumber)`	parseCrossLinkingFeatures.
`protected List<CsvRange>`	AbstractCsvInteractionEvidenceParser.`parsePositions(String pos, int lineNumber, int colNumber)`	parsePositions.

Methods in psidev.psi.mi.jami.crosslink.io.parser with parameters of type CsvRange
Modifier and Type	Method	Description
`protected CsvFeatureEvidence`	AbstractCsvInteractionEvidenceParser.`createCrossLinkFeatureEvidence(CsvRange range)`	createCrossLinkFeatureEvidence.
`protected CsvParticipantEvidence`	AbstractCsvInteractionEvidenceParser.`createParticipantEvidence(CsvProtein csvProtein, int lineNumber, int columnNumber, CsvRange range)`	createParticipantEvidence.

Method parameters in psidev.psi.mi.jami.crosslink.io.parser with type arguments of type CsvRange
Modifier and Type	Method	Description
`protected void`	AbstractCsvInteractionEvidenceParser.`processMismatchPeptidePositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	processMismatchPeptidePositions.
`protected void`	AbstractCsvInteractionEvidenceParser.`processMismatchProteinPositions(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	processMismatchProteinPositions.

Uses of CsvRange in psidev.psi.mi.jami.crosslink.listener

Method parameters in psidev.psi.mi.jami.crosslink.listener with type arguments of type CsvRange
Modifier and Type	Method	Description
`void`	CsvParserListener.`onMismatchBetweenPeptideAndLinkedPositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	Event fired when the number of peptide positions is greater than one and is not the same as the number of linked positions
`void`	CsvParserLogger.`onMismatchBetweenPeptideAndLinkedPositions(List<CsvRange> peptidePositions, List<CsvRange> linkedPositions)`	Event fired when the number of peptide positions is greater than one and is not the same as the number of linked positions
`void`	CsvParserListener.`onMismatchBetweenRangePositionsAndProteins(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	Event fired when the number of range positions is superior to 1 and the number of proteins is also superior to 1 but does not match the number of ranges
`void`	CsvParserLogger.`onMismatchBetweenRangePositionsAndProteins(List<CsvRange> rangePositions, List<CsvProtein> proteins)`	Event fired when the number of range positions is superior to 1 and the number of proteins is also superior to 1 but does not match the number of ranges