Package psidev.psi.mi.jami.crosslink.extension

Class CsvRange

java.lang.Object

psidev.psi.mi.jami.model.impl.DefaultRange

psidev.psi.mi.jami.crosslink.extension.CsvRange

All Implemented Interfaces:

FileSourceContext, Range

public class CsvRange
extends DefaultRange
implements FileSourceContext

Crosslink CSV extension of Range It contains a FileSourceLocator

Since:

11/06/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Field Summary

Fields inherited from interface psidev.psi.mi.jami.model.Range

C_TERMINAL_POSITION_SYMBOL, FUZZY_POSITION_SYMBOL, GREATER_THAN_POSITION_SYMBOL, LESS_THAN_POSITION_SYMBOL, N_TERMINAL_POSITION_SYMBOL, POSITION_SEPARATOR, UNDETERMINED_POSITION_SYMBOL

Constructor Summary

Constructors

Constructor	Description
CsvRange(Position start, Position end)	Constructor for CsvRange.
CsvRange(Position start, Position end, boolean isLink)	Constructor for CsvRange.
CsvRange(Position start, Position end, boolean isLink, Participant participant)	Constructor for CsvRange.
CsvRange(Position start, Position end, boolean isLink, ResultingSequence resultingSequence)	Constructor for CsvRange.
CsvRange(Position start, Position end, Participant participant)	Constructor for CsvRange.
CsvRange(Position start, Position end, ResultingSequence resultingSequence)	Constructor for CsvRange.

Method Summary

Modifier and Type	Method	Description
FileSourceLocator	getSourceLocator()	Getter for the field sourceLocator.
void	setSourceLocator(FileSourceLocator sourceLocator)	Sets the source locator
String	toString()

Methods inherited from class psidev.psi.mi.jami.model.impl.DefaultRange

equals, getEnd, getParticipant, getResultingSequence, getStart, hashCode, isLink, setLink, setParticipant, setPositions, setResultingSequence

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Constructor Detail

CsvRange

public CsvRange(Position start,
                Position end)

Constructor for CsvRange.

Parameters:

start - a Position object.

end - a Position object.

CsvRange

public CsvRange(Position start,
                Position end,
                boolean isLink)

Constructor for CsvRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

CsvRange

public CsvRange(Position start,
                Position end,
                ResultingSequence resultingSequence)

Constructor for CsvRange.

Parameters:

start - a Position object.

end - a Position object.

resultingSequence - a ResultingSequence object.

CsvRange

public CsvRange(Position start,
                Position end,
                boolean isLink,
                ResultingSequence resultingSequence)

Constructor for CsvRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

resultingSequence - a ResultingSequence object.

CsvRange

public CsvRange(Position start,
                Position end,
                Participant participant)

Constructor for CsvRange.

Parameters:

start - a Position object.

end - a Position object.

participant - a Participant object.

CsvRange

public CsvRange(Position start,
                Position end,
                boolean isLink,
                Participant participant)

Constructor for CsvRange.

Parameters:

start - a Position object.

end - a Position object.

isLink - a boolean.

participant - a Participant object.

Method Detail

getSourceLocator

public FileSourceLocator getSourceLocator()

Getter for the field sourceLocator.

Specified by:

getSourceLocator in interface FileSourceContext

Returns:

a FileSourceLocator object.

setSourceLocator

public void setSourceLocator(FileSourceLocator sourceLocator)

Sets the source locator

Specified by:

setSourceLocator in interface FileSourceContext

Parameters:

sourceLocator - : the file locator

toString

public String toString()

Specified by:

toString in interface FileSourceContext

Overrides:

toString in class DefaultRange

Returns:

the file source context as a String. If the source locator is not null, it should give the source locator properties