Interface CsvSource<I extends InteractionEvidence>
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- All Superinterfaces:
CsvParserListener,CsvStreamSource<I>,InteractionEvidenceSource<I>,InteractionEvidenceStream<I>,InteractionSource<I>,InteractionStream<I>,MIDataSource,MIFileDataSource,MIFileParserListener
- All Known Implementing Classes:
AbstractCsvSource,CsvBinaryEvidenceSource,CsvEvidenceSource,CsvMixedEvidenceSource,CsvNaryEvidenceSource
public interface CsvSource<I extends InteractionEvidence> extends CsvStreamSource<I>, InteractionEvidenceSource<I>
Interface for Crosslink CSV sources that can parse full CSV files- Since:
02/05/14
- Version:
- $Id$
- Author:
- Marine Dumousseau (marine@ebi.ac.uk)
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Field Summary
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Fields inherited from interface psidev.psi.mi.jami.datasource.MIFileDataSource
FILE_URI_PREFIX, URL_PREFIX_REGEXP
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Method Summary
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Methods inherited from interface psidev.psi.mi.jami.crosslink.listener.CsvParserListener
onInvalidProteinIdentifierSyntax, onMismatchBetweenPeptideAndLinkedPositions, onMismatchBetweenRangePositionsAndProteins, onMissingProtein1Column
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Methods inherited from interface psidev.psi.mi.jami.datasource.InteractionSource
getInteractions, getNumberOfInteractions
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Methods inherited from interface psidev.psi.mi.jami.datasource.InteractionStream
getInteractionsIterator
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Methods inherited from interface psidev.psi.mi.jami.datasource.MIDataSource
close, initialiseContext, reset
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Methods inherited from interface psidev.psi.mi.jami.datasource.MIFileDataSource
getFileParserListener, setFileParserListener, validateSyntax, validateSyntax
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Methods inherited from interface psidev.psi.mi.jami.listener.MIFileParserListener
onAliasWithoutName, onAnnotationWithoutTopic, onInteractionWithoutParticipants, onInvalidOrganismTaxid, onInvalidPosition, onInvalidRange, onInvalidStoichiometry, onInvalidSyntax, onMissingChecksumMethod, onMissingChecksumValue, onMissingConfidenceType, onMissingConfidenceValue, onMissingCvTermName, onMissingInteractorName, onMissingParameterType, onMissingParameterValue, onParticipantWithoutInteractor, onSyntaxWarning, onXrefWithoutDatabase, onXrefWithoutId
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