Package psidev.psi.mi.jami.enricher.impl.full

Class FullComplexUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher<I>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalModelledInteractionEnricher<I>

psidev.psi.mi.jami.enricher.impl.full.FullModelledInteractionEnricher<I>

psidev.psi.mi.jami.enricher.impl.full.FullModelledInteractionUpdater<Complex>

psidev.psi.mi.jami.enricher.impl.full.FullComplexUpdater

All Implemented Interfaces:

ComplexEnricher, InteractionEnricher<Complex>, InteractorEnricher<Complex>, MIEnricher<Complex>, ModelledInteractionEnricher<Complex>

public class FullComplexUpdater
extends FullModelledInteractionUpdater<Complex>
implements ComplexEnricher

Full enricher for complexes

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Modifier	Constructor	Description
	FullComplexUpdater()	Constructor for FullComplexUpdater.
protected	FullComplexUpdater(FullInteractorBaseUpdater<Complex> interactorEnricher)	Constructor for FullComplexUpdater.

Method Summary

Modifier and Type	Method	Description
protected FullInteractorBaseUpdater<Complex>	getInteractorEnricher()	Getter for the field interactorEnricher.
InteractorFetcher<Complex>	getInteractorFetcher()	getInteractorFetcher.
InteractorEnricherListener<Complex>	getListener()	getListener.
OrganismEnricher	getOrganismEnricher()	getOrganismEnricher.
protected void	processOtherProperties(Complex interactionToEnrich)	Strategy for the Interaction enrichment.
protected void	processOtherProperties(Complex objectToEnrich, Complex objectSource)	processOtherProperties.
void	setCvTermEnricher(CvTermEnricher cvTermEnricher)	setCvTermEnricher.
void	setListener(InteractorEnricherListener<Complex> listener)	setListener.
void	setOrganismEnricher(OrganismEnricher organismEnricher)	setOrganismEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullModelledInteractionUpdater

processConfidences, processCooperativeEffects, processEvidenceType, processInteractionEvidences, processParameters, processSource

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullModelledInteractionEnricher

getCvTermEnricher, getEvidenceEnricher, getInteractionEnricher, getInteractionEnricherListener, getParticipantEnricher, mergeCooperativeEffects, mergeInteractionEvidences, processEvidenceType, processInteractionEvidences, setEvidenceEnricher, setInteractionEnricherListener, setParticipantEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalModelledInteractionEnricher

getSourceEnricher, processSource, setSourceEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher

enrich, enrich, enrich, processCreatedDate, processIdentifiers, processInteractionType, processInteractionType, processMinimalUpdates, processParticipants, processParticipants, processShortName, processUpdateDate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.InteractionEnricher

getCvTermEnricher, getInteractionEnricherListener, getParticipantEnricher, setInteractionEnricherListener, setParticipantEnricher

Methods inherited from interface psidev.psi.mi.jami.enricher.InteractorEnricher

getCvTermEnricher

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Methods inherited from interface psidev.psi.mi.jami.enricher.ModelledInteractionEnricher

getSourceEnricher, setSourceEnricher

Constructor Detail

FullComplexUpdater

public FullComplexUpdater()

Constructor for FullComplexUpdater.

FullComplexUpdater

protected FullComplexUpdater(FullInteractorBaseUpdater<Complex> interactorEnricher)

Constructor for FullComplexUpdater.

Parameters:

interactorEnricher - a FullInteractorBaseUpdater object.

Method Detail

processOtherProperties

protected void processOtherProperties(Complex interactionToEnrich)
                               throws EnricherException

Strategy for the Interaction enrichment. This method can be overwritten to change how the interaction is enriched.

Overrides:

processOtherProperties in class FullModelledInteractionEnricher<Complex>

Parameters:

interactionToEnrich - The interaction to be enriched.

Throws:

EnricherException - if any.

processOtherProperties

protected void processOtherProperties(Complex objectToEnrich,
                                      Complex objectSource)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class FullModelledInteractionEnricher<Complex>

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

getInteractorFetcher

public InteractorFetcher<Complex> getInteractorFetcher()

getInteractorFetcher.

Specified by:

getInteractorFetcher in interface InteractorEnricher<Complex>

Returns:

a InteractorFetcher object.

setListener

public void setListener(InteractorEnricherListener<Complex> listener)

setListener.

Specified by:

setListener in interface InteractorEnricher<Complex>

Parameters:

listener - a InteractorEnricherListener object.

getListener

public InteractorEnricherListener<Complex> getListener()

getListener.

Specified by:

getListener in interface InteractorEnricher<Complex>

Returns:

a InteractorEnricherListener object.

setCvTermEnricher

public void setCvTermEnricher(CvTermEnricher cvTermEnricher)

setCvTermEnricher.

The current sub enricher for CvTerms.

Specified by:

setCvTermEnricher in interface InteractionEnricher<Complex>

Specified by:

setCvTermEnricher in interface InteractorEnricher<Complex>

Overrides:

setCvTermEnricher in class FullModelledInteractionEnricher<Complex>

Parameters:

cvTermEnricher - a CvTermEnricher object.

setOrganismEnricher

public void setOrganismEnricher(OrganismEnricher organismEnricher)

setOrganismEnricher.

Specified by:

setOrganismEnricher in interface InteractorEnricher<Complex>

Parameters:

organismEnricher - a OrganismEnricher object.

getOrganismEnricher

public OrganismEnricher getOrganismEnricher()

getOrganismEnricher.

Specified by:

getOrganismEnricher in interface InteractorEnricher<Complex>

Returns:

a OrganismEnricher object.

getInteractorEnricher

protected FullInteractorBaseUpdater<Complex> getInteractorEnricher()

Getter for the field interactorEnricher.

Returns:

a FullInteractorBaseUpdater object.