Package psidev.psi.mi.jami.enricher.impl.full

Class FullInteractionEvidenceEnricher

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher<InteractionEvidence>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEvidenceEnricher

psidev.psi.mi.jami.enricher.impl.full.FullInteractionEvidenceEnricher

All Implemented Interfaces:

InteractionEnricher<InteractionEvidence>, InteractionEvidenceEnricher, MIEnricher<InteractionEvidence>

Direct Known Subclasses:

FullInteractionEvidenceUpdater

public class FullInteractionEvidenceEnricher
extends MinimalInteractionEvidenceEnricher

Full enricher for Interaction evidence

Since:

01/10/13

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Modifier	Constructor	Description
	FullInteractionEvidenceEnricher()	Constructor for FullInteractionEvidenceEnricher.
protected	FullInteractionEvidenceEnricher(FullInteractionEnricher<InteractionEvidence> interactionEnricher)	Constructor for FullInteractionEvidenceEnricher.

Method Summary

Modifier and Type	Method	Description
CvTermEnricher<CvTerm>	getCvTermEnricher()	Sets the sub enricher for CvTerms.
protected FullInteractionEnricher<InteractionEvidence>	getInteractionEnricher()	Getter for the field interactionEnricher.
InteractionEnricherListener<InteractionEvidence>	getInteractionEnricherListener()	The listener for changes made to interactions.
ParticipantEnricher	getParticipantEnricher()	The current sub enricher for participants.
protected void	mergerVariableParameters(InteractionEvidence interactionToEnrich, InteractionEvidence objectSource, boolean remove)	mergerVariableParameters.
protected void	processConfidences(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processConfidences.
protected void	processOtherProperties(InteractionEvidence interactionToEnrich)	The strategy used for enriching the interaction.
protected void	processOtherProperties(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processOtherProperties.
protected void	processParameters(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processParameters.
protected void	processVariableParameters(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processVariableParameters.
void	setCvTermEnricher(CvTermEnricher cvTermEnricher)	setCvTermEnricher.
void	setInteractionEnricherListener(InteractionEnricherListener listener)	setInteractionEnricherListener.
void	setParticipantEnricher(ParticipantEnricher participantEnricher)	setParticipantEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEvidenceEnricher

getExperimentEnricher, processExperiment, processExperiment, setExperimentEnricher

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher

enrich, enrich, enrich, processCreatedDate, processIdentifiers, processInteractionType, processInteractionType, processMinimalUpdates, processParticipants, processParticipants, processShortName, processUpdateDate

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Constructor Detail

FullInteractionEvidenceEnricher

public FullInteractionEvidenceEnricher()

Constructor for FullInteractionEvidenceEnricher.

FullInteractionEvidenceEnricher

protected FullInteractionEvidenceEnricher(FullInteractionEnricher<InteractionEvidence> interactionEnricher)

Constructor for FullInteractionEvidenceEnricher.

Parameters:

interactionEnricher - a FullInteractionEnricher object.

Method Detail

processOtherProperties

protected void processOtherProperties(InteractionEvidence interactionToEnrich)
                               throws EnricherException

The strategy used for enriching the interaction. Can be overwritten to change the behaviour. Strategy for the Interaction enrichment. This method can be overwritten to change how the interaction is enriched.

Overrides:

processOtherProperties in class MinimalInteractionEvidenceEnricher

Parameters:

interactionToEnrich - The interaction being enriched.

Throws:

EnricherException - Thrown if a fetcher encounters a problem.

processOtherProperties

protected void processOtherProperties(InteractionEvidence objectToEnrich,
                                      InteractionEvidence objectSource)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalInteractionEvidenceEnricher

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

getCvTermEnricher

public CvTermEnricher<CvTerm> getCvTermEnricher()

Sets the sub enricher for CvTerms.

Specified by:

getCvTermEnricher in interface InteractionEnricher<InteractionEvidence>

Overrides:

getCvTermEnricher in class MinimalInteractionEnricher<InteractionEvidence>

Returns:

The enricher for CvTerms. Can be null.

getParticipantEnricher

public ParticipantEnricher getParticipantEnricher()

The current sub enricher for participants.

Specified by:

getParticipantEnricher in interface InteractionEnricher<InteractionEvidence>

Overrides:

getParticipantEnricher in class MinimalInteractionEnricher<InteractionEvidence>

Returns:

The enricher for participants. Can be null.

getInteractionEnricherListener

public InteractionEnricherListener<InteractionEvidence> getInteractionEnricherListener()

The listener for changes made to interactions.

Specified by:

getInteractionEnricherListener in interface InteractionEnricher<InteractionEvidence>

Overrides:

getInteractionEnricherListener in class MinimalInteractionEnricher<InteractionEvidence>

Returns:

The listener for interaction changes. Can be null.

setCvTermEnricher

public void setCvTermEnricher(CvTermEnricher cvTermEnricher)

setCvTermEnricher.

The current sub enricher for CvTerms.

Specified by:

setCvTermEnricher in interface InteractionEnricher<InteractionEvidence>

Overrides:

setCvTermEnricher in class MinimalInteractionEnricher<InteractionEvidence>

Parameters:

cvTermEnricher - a CvTermEnricher object.

setParticipantEnricher

public void setParticipantEnricher(ParticipantEnricher participantEnricher)

setParticipantEnricher.

Sets the sub enricher for participants.

Specified by:

setParticipantEnricher in interface InteractionEnricher<InteractionEvidence>

Overrides:

setParticipantEnricher in class MinimalInteractionEnricher<InteractionEvidence>

Parameters:

participantEnricher - a ParticipantEnricher object.

setInteractionEnricherListener

public void setInteractionEnricherListener(InteractionEnricherListener listener)

setInteractionEnricherListener.

Sets the listener to be used when interactions are changed.

Specified by:

setInteractionEnricherListener in interface InteractionEnricher<InteractionEvidence>

Overrides:

setInteractionEnricherListener in class MinimalInteractionEnricher<InteractionEvidence>

Parameters:

listener - a InteractionEnricherListener object.

processConfidences

protected void processConfidences(InteractionEvidence objectToEnrich,
                                  InteractionEvidence objectSource)
                           throws EnricherException

processConfidences.

Parameters:

objectToEnrich - a InteractionEvidence object.

objectSource - a InteractionEvidence object.

Throws:

EnricherException - if any.

processParameters

protected void processParameters(InteractionEvidence objectToEnrich,
                                 InteractionEvidence objectSource)
                          throws EnricherException

processParameters.

Parameters:

objectToEnrich - a InteractionEvidence object.

objectSource - a InteractionEvidence object.

Throws:

EnricherException - if any.

processVariableParameters

protected void processVariableParameters(InteractionEvidence objectToEnrich,
                                         InteractionEvidence objectSource)
                                  throws EnricherException

processVariableParameters.

Parameters:

objectToEnrich - a InteractionEvidence object.

objectSource - a InteractionEvidence object.

Throws:

EnricherException - if any.

mergerVariableParameters

protected void mergerVariableParameters(InteractionEvidence interactionToEnrich,
                                        InteractionEvidence objectSource,
                                        boolean remove)

mergerVariableParameters.

Parameters:

interactionToEnrich - a InteractionEvidence object.

objectSource - a InteractionEvidence object.

remove - a boolean.

getInteractionEnricher

protected FullInteractionEnricher<InteractionEvidence> getInteractionEnricher()

Getter for the field interactionEnricher.

Returns:

a FullInteractionEnricher object.