Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalInteractionEvidenceEnricher

java.lang.Object

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher<InteractionEvidence>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEvidenceEnricher

All Implemented Interfaces:

InteractionEnricher<InteractionEvidence>, InteractionEvidenceEnricher, MIEnricher<InteractionEvidence>

Direct Known Subclasses:

FullInteractionEvidenceEnricher, MinimalInteractionEvidenceUpdater

public class MinimalInteractionEvidenceEnricher
extends MinimalInteractionEnricher<InteractionEvidence>
implements InteractionEvidenceEnricher

Minimal enricher for interaction evidence

Since:

13/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MinimalInteractionEvidenceEnricher()

Method Summary

Modifier and Type	Method	Description
ExperimentEnricher	getExperimentEnricher()	The experimentEnricher which is currently being used for the enriching or updating of experiments.
protected void	processExperiment(InteractionEvidence interactionToEnrich)	processExperiment.
protected void	processExperiment(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processExperiment.
protected void	processOtherProperties(InteractionEvidence interactionToEnrich)	The strategy used for enriching the interaction.
protected void	processOtherProperties(InteractionEvidence objectToEnrich, InteractionEvidence objectSource)	processOtherProperties.
void	setExperimentEnricher(ExperimentEnricher experimentEnricher)	setExperimentEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractionEnricher

enrich, enrich, enrich, getCvTermEnricher, getInteractionEnricherListener, getParticipantEnricher, processCreatedDate, processIdentifiers, processInteractionType, processInteractionType, processMinimalUpdates, processParticipants, processParticipants, processShortName, processUpdateDate, setCvTermEnricher, setInteractionEnricherListener, setParticipantEnricher

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.InteractionEnricher

getCvTermEnricher, getInteractionEnricherListener, getParticipantEnricher, setCvTermEnricher, setInteractionEnricherListener, setParticipantEnricher

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Constructor Detail

MinimalInteractionEvidenceEnricher

public MinimalInteractionEvidenceEnricher()

Method Detail

processOtherProperties

protected void processOtherProperties(InteractionEvidence interactionToEnrich)
                               throws EnricherException

The strategy used for enriching the interaction. Can be overwritten to change the behaviour. Strategy for the Interaction enrichment. This method can be overwritten to change how the interaction is enriched.

Overrides:

processOtherProperties in class MinimalInteractionEnricher<InteractionEvidence>

Parameters:

interactionToEnrich - The interaction being enriched.

Throws:

EnricherException - Thrown if a fetcher encounters a problem.

getExperimentEnricher

public ExperimentEnricher getExperimentEnricher()

The experimentEnricher which is currently being used for the enriching or updating of experiments.

Specified by:

getExperimentEnricher in interface InteractionEvidenceEnricher

Returns:

The experiment enricher. Can be null.

setExperimentEnricher

public void setExperimentEnricher(ExperimentEnricher experimentEnricher)

setExperimentEnricher.

Sets the experimentEnricher to be used.

Specified by:

setExperimentEnricher in interface InteractionEvidenceEnricher

Parameters:

experimentEnricher - a ExperimentEnricher object.

processExperiment

protected void processExperiment(InteractionEvidence interactionToEnrich)
                          throws EnricherException

processExperiment.

Parameters:

interactionToEnrich - a InteractionEvidence object.

Throws:

EnricherException - if any.

processOtherProperties

protected void processOtherProperties(InteractionEvidence objectToEnrich,
                                      InteractionEvidence objectSource)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class MinimalInteractionEnricher<InteractionEvidence>

Parameters:

objectToEnrich - a I object.

objectSource - a I object.

Throws:

EnricherException - if any.

processExperiment

protected void processExperiment(InteractionEvidence objectToEnrich,
                                 InteractionEvidence objectSource)
                          throws EnricherException

processExperiment.

Parameters:

objectToEnrich - a InteractionEvidence object.

objectSource - a InteractionEvidence object.

Throws:

EnricherException - if any.