Package psidev.psi.mi.jami.enricher.impl.full

Class FullInteractorPoolEnricher

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<T>

psidev.psi.mi.jami.enricher.impl.AbstractInteractorEnricher<T>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractorBaseEnricher<T>

psidev.psi.mi.jami.enricher.impl.full.FullInteractorBaseEnricher<InteractorPool>

psidev.psi.mi.jami.enricher.impl.full.FullInteractorPoolEnricher

All Implemented Interfaces:

InteractorEnricher<InteractorPool>, InteractorPoolEnricher, MIEnricher<InteractorPool>

public class FullInteractorPoolEnricher
extends FullInteractorBaseEnricher<InteractorPool>
implements InteractorPoolEnricher

A full enricher for interactor pools. See description of minimal enrichment in AbstractInteractorEnricher. - enrich all interactors in existing pool using a composite interactor enricher if it is not null. It will only add missing interactors in the pool and not remove any interactors that are not in the fetched interactor pool

Since:

30/01/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullInteractorPoolEnricher()	Constructor for FullInteractorPoolEnricher.
FullInteractorPoolEnricher(InteractorFetcher<InteractorPool> fetcher)	Constructor for FullInteractorPoolEnricher.

Method Summary

Modifier and Type	Method	Description
Comparator<Interactor>	getInteractorComparator()	Getter for the field interactorComparator.
CompositeInteractorEnricher	getInteractorEnricher()	Getter for the field interactorEnricher.
protected boolean	isFullEnrichment()	isFullEnrichment.
protected void	processMembers(InteractorPool poolToEnrich, InteractorPool fetched)	processMembers.
protected void	processOtherProperties(InteractorPool poolToEnrich, InteractorPool fetched)	processOtherProperties.
void	setInteractorComparator(Comparator<Interactor> interactorComparator)	setInteractorComparator.
void	setInteractorEnricher(CompositeInteractorEnricher interactorEnricher)	setInteractorEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalInteractorBaseEnricher

find, onCompletedEnrichment, onInteractorCheckFailure

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractInteractorEnricher

canEnrichInteractor, enrich, getCvTermEnricher, getInteractorFetcher, getListener, getOrganismEnricher, getRetryCount, onEnrichedVersionNotFound, processAliases, processAnnotations, processChecksums, processFullName, processIdentifiers, processInteractorType, processInteractorType, processOrganism, processOrganism, processShortLabel, processXrefs, setCvTermEnricher, setListener, setOrganismEnricher, setRetryCount

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.InteractorEnricher

getCvTermEnricher, getInteractorFetcher, getListener, getOrganismEnricher, setCvTermEnricher, setListener, setOrganismEnricher

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich, enrich

Constructor Detail

FullInteractorPoolEnricher

public FullInteractorPoolEnricher()

Constructor for FullInteractorPoolEnricher.

FullInteractorPoolEnricher

public FullInteractorPoolEnricher(InteractorFetcher<InteractorPool> fetcher)

Constructor for FullInteractorPoolEnricher.

Parameters:

fetcher - a InteractorFetcher object.

Method Detail

getInteractorEnricher

public CompositeInteractorEnricher getInteractorEnricher()

Getter for the field interactorEnricher.

Specified by:

getInteractorEnricher in interface InteractorPoolEnricher

Returns:

a CompositeInteractorEnricher object.

setInteractorEnricher

public void setInteractorEnricher(CompositeInteractorEnricher interactorEnricher)

setInteractorEnricher.

Specified by:

setInteractorEnricher in interface InteractorPoolEnricher

Parameters:

interactorEnricher - a CompositeInteractorEnricher object.

getInteractorComparator

public Comparator<Interactor> getInteractorComparator()

Getter for the field interactorComparator.

Specified by:

getInteractorComparator in interface InteractorPoolEnricher

Returns:

a Comparator object.

setInteractorComparator

public void setInteractorComparator(Comparator<Interactor> interactorComparator)

setInteractorComparator.

Specified by:

setInteractorComparator in interface InteractorPoolEnricher

Parameters:

interactorComparator - a Comparator object.

isFullEnrichment

protected boolean isFullEnrichment()

isFullEnrichment.

Overrides:

isFullEnrichment in class FullInteractorBaseEnricher<InteractorPool>

Returns:

a boolean.

processOtherProperties

protected void processOtherProperties(InteractorPool poolToEnrich,
                                      InteractorPool fetched)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class AbstractInteractorEnricher<InteractorPool>

Parameters:

poolToEnrich - a T object.

fetched - a T object.

Throws:

EnricherException - if any.

processMembers

protected void processMembers(InteractorPool poolToEnrich,
                              InteractorPool fetched)
                       throws EnricherException

processMembers.

Parameters:

poolToEnrich - a InteractorPool object.

fetched - a InteractorPool object.

Throws:

EnricherException - if any.