Package psidev.psi.mi.jami.enricher.impl

Class CompositeInteractorEnricher

java.lang.Object

psidev.psi.mi.jami.enricher.impl.CompositeInteractorEnricher

All Implemented Interfaces:

InteractorEnricher<Interactor>, MIEnricher<Interactor>

public class CompositeInteractorEnricher
extends Object
implements InteractorEnricher<Interactor>

General enricher for interactors that can use sub enrichers for enriching specific interactors

Since:

11/02/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
CompositeInteractorEnricher(AbstractInteractorEnricher<Interactor> interactorBaseEnricher)	Constructor for CompositeInteractorEnricher.

Method Summary

Modifier and Type	Method	Description
void	enrich(Collection<Interactor> objects)	enrich.
void	enrich(Interactor object)	enrich.
void	enrich(Interactor object, Interactor objectSource)	enrich.
InteractorEnricher<BioactiveEntity>	getBioactiveEntityEnricher()	Getter for the field bioactiveEntityEnricher.
ComplexEnricher	getComplexEnricher()	Getter for the field complexEnricher.
CvTermEnricher<CvTerm>	getCvTermEnricher()	getCvTermEnricher.
InteractorEnricher<Gene>	getGeneEnricher()	Getter for the field geneEnricher.
AbstractInteractorEnricher<Interactor>	getInteractorBaseEnricher()	Getter for the field interactorBaseEnricher.
InteractorFetcher<Interactor>	getInteractorFetcher()	getInteractorFetcher.
InteractorPoolEnricher	getInteractorPoolEnricher()	Getter for the field interactorPoolEnricher.
InteractorEnricherListener<Interactor>	getListener()	getListener.
OrganismEnricher	getOrganismEnricher()	getOrganismEnricher.
InteractorEnricher<Polymer>	getPolymerBaseEnricher()	Getter for the field polymerBaseEnricher.
ProteinEnricher	getProteinEnricher()	Getter for the field proteinEnricher.
void	setBioactiveEntityEnricher(InteractorEnricher<BioactiveEntity> bioactiveEntityEnricher)	Setter for the field bioactiveEntityEnricher.
void	setComplexEnricher(ComplexEnricher complexEnricher)	Setter for the field complexEnricher.
void	setCvTermEnricher(CvTermEnricher<CvTerm> enricher)	setCvTermEnricher.
void	setGeneEnricher(InteractorEnricher<Gene> geneEnricher)	Setter for the field geneEnricher.
void	setInteractorPoolEnricher(InteractorPoolEnricher interactorPoolEnricher)	Setter for the field interactorPoolEnricher.
void	setListener(InteractorEnricherListener<Interactor> listener)	setListener.
void	setOrganismEnricher(OrganismEnricher enricher)	setOrganismEnricher.
void	setPolymerBaseEnricher(InteractorEnricher<Polymer> polymerBaseEnricher)	Setter for the field polymerBaseEnricher.
void	setProteinEnricher(ProteinEnricher proteinEnricher)	Setter for the field proteinEnricher.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

CompositeInteractorEnricher

public CompositeInteractorEnricher(AbstractInteractorEnricher<Interactor> interactorBaseEnricher)

Constructor for CompositeInteractorEnricher.

Parameters:

interactorBaseEnricher - a AbstractInteractorEnricher object.

Method Detail

getPolymerBaseEnricher

public InteractorEnricher<Polymer> getPolymerBaseEnricher()

Getter for the field polymerBaseEnricher.

Returns:

a InteractorEnricher object.

setPolymerBaseEnricher

public void setPolymerBaseEnricher(InteractorEnricher<Polymer> polymerBaseEnricher)

Setter for the field polymerBaseEnricher.

Parameters:

polymerBaseEnricher - a InteractorEnricher object.

getInteractorPoolEnricher

public InteractorPoolEnricher getInteractorPoolEnricher()

Getter for the field interactorPoolEnricher.

Returns:

a InteractorPoolEnricher object.

setInteractorPoolEnricher

public void setInteractorPoolEnricher(InteractorPoolEnricher interactorPoolEnricher)

Setter for the field interactorPoolEnricher.

Parameters:

interactorPoolEnricher - a InteractorPoolEnricher object.

getProteinEnricher

public ProteinEnricher getProteinEnricher()

Getter for the field proteinEnricher.

Returns:

a ProteinEnricher object.

setProteinEnricher

public void setProteinEnricher(ProteinEnricher proteinEnricher)

Setter for the field proteinEnricher.

Parameters:

proteinEnricher - a ProteinEnricher object.

getBioactiveEntityEnricher

public InteractorEnricher<BioactiveEntity> getBioactiveEntityEnricher()

Getter for the field bioactiveEntityEnricher.

Returns:

a InteractorEnricher object.

setBioactiveEntityEnricher

public void setBioactiveEntityEnricher(InteractorEnricher<BioactiveEntity> bioactiveEntityEnricher)

Setter for the field bioactiveEntityEnricher.

Parameters:

bioactiveEntityEnricher - a InteractorEnricher object.

getGeneEnricher

public InteractorEnricher<Gene> getGeneEnricher()

Getter for the field geneEnricher.

Returns:

a InteractorEnricher object.

setGeneEnricher

public void setGeneEnricher(InteractorEnricher<Gene> geneEnricher)

Setter for the field geneEnricher.

Parameters:

geneEnricher - a InteractorEnricher object.

getComplexEnricher

public ComplexEnricher getComplexEnricher()

Getter for the field complexEnricher.

Returns:

a ComplexEnricher object.

setComplexEnricher

public void setComplexEnricher(ComplexEnricher complexEnricher)

Setter for the field complexEnricher.

Parameters:

complexEnricher - a ComplexEnricher object.

getInteractorBaseEnricher

public AbstractInteractorEnricher<Interactor> getInteractorBaseEnricher()

Getter for the field interactorBaseEnricher.

Returns:

a AbstractInteractorEnricher object.

enrich

public void enrich(Interactor object)
            throws EnricherException

enrich.

Specified by:

enrich in interface MIEnricher<Interactor>

Parameters:

object - a Interactor object.

Throws:

EnricherException - if any.

enrich

public void enrich(Collection<Interactor> objects)
            throws EnricherException

enrich.

Specified by:

enrich in interface MIEnricher<Interactor>

Parameters:

objects - a Collection object.

Throws:

EnricherException - if any.

enrich

public void enrich(Interactor object,
                   Interactor objectSource)
            throws EnricherException

enrich.

Specified by:

enrich in interface MIEnricher<Interactor>

Parameters:

object - a Interactor object.

objectSource - a Interactor object.

Throws:

EnricherException - if any.

getInteractorFetcher

public InteractorFetcher<Interactor> getInteractorFetcher()

getInteractorFetcher.

Specified by:

getInteractorFetcher in interface InteractorEnricher<Interactor>

Returns:

a InteractorFetcher object.

getListener

public InteractorEnricherListener<Interactor> getListener()

getListener.

Specified by:

getListener in interface InteractorEnricher<Interactor>

Returns:

a InteractorEnricherListener object.

getCvTermEnricher

public CvTermEnricher<CvTerm> getCvTermEnricher()

getCvTermEnricher.

Specified by:

getCvTermEnricher in interface InteractorEnricher<Interactor>

Returns:

a CvTermEnricher object.

getOrganismEnricher

public OrganismEnricher getOrganismEnricher()

getOrganismEnricher.

Specified by:

getOrganismEnricher in interface InteractorEnricher<Interactor>

Returns:

a OrganismEnricher object.

setListener

public void setListener(InteractorEnricherListener<Interactor> listener)

setListener.

Specified by:

setListener in interface InteractorEnricher<Interactor>

Parameters:

listener - a InteractorEnricherListener object.

setCvTermEnricher

public void setCvTermEnricher(CvTermEnricher<CvTerm> enricher)

setCvTermEnricher.

Specified by:

setCvTermEnricher in interface InteractorEnricher<Interactor>

Parameters:

enricher - a CvTermEnricher object.

setOrganismEnricher

public void setOrganismEnricher(OrganismEnricher enricher)

setOrganismEnricher.

Specified by:

setOrganismEnricher in interface InteractorEnricher<Interactor>

Parameters:

enricher - a OrganismEnricher object.