Package psidev.psi.mi.jami.enricher.impl.full

Class FullInteractorPoolUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<T>

psidev.psi.mi.jami.enricher.impl.AbstractInteractorEnricher<T>

psidev.psi.mi.jami.enricher.impl.AbstractInteractorUpdater<T>

psidev.psi.mi.jami.enricher.impl.full.FullInteractorBaseUpdater<InteractorPool>

psidev.psi.mi.jami.enricher.impl.full.FullInteractorPoolUpdater

All Implemented Interfaces:

InteractorEnricher<InteractorPool>, MIEnricher<InteractorPool>

public class FullInteractorPoolUpdater
extends FullInteractorBaseUpdater<InteractorPool>

A full updater for interactor pools. See description of full update in AbstractInteractorUpdater. - update all interactors in existing pool using a composite interactor enricher if it is not null. It will add missing interactors in the pool and remove any interactors that are not in the fetched interactor pool

Since:

30/01/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullInteractorPoolUpdater()	Constructor for FullInteractorPoolUpdater.
FullInteractorPoolUpdater(InteractorFetcher<InteractorPool> fetcher)	Constructor for FullInteractorPoolUpdater.

Method Summary

Modifier and Type	Method	Description
Comparator<Interactor>	getInteractorComparator()	Getter for the field interactorComparator.
CompositeInteractorEnricher	getInteractorMemberEnricher()	getInteractorMemberEnricher.
protected boolean	isFullEnrichment()	isFullEnrichment.
protected void	processMembers(InteractorPool poolToEnrich, InteractorPool fetched)	processMembers.
protected void	processOtherProperties(InteractorPool poolToEnrich, InteractorPool fetched)	processOtherProperties.
void	setInteractorComparator(Comparator<Interactor> interactorComparator)	Setter for the field interactorComparator.
void	setInteractorEnricher(CompositeInteractorEnricher interactorEnricher)	Setter for the field interactorEnricher.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractInteractorUpdater

canEnrichInteractor, find, getInteractorEnricher, getListener, onCompletedEnrichment, onEnrichedVersionNotFound, onInteractorCheckFailure, processAliases, processAnnotations, processChecksums, processFullName, processIdentifiers, processInteractorType, processOrganism, processShortLabel, processXrefs, setListener

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractInteractorEnricher

enrich, getCvTermEnricher, getInteractorFetcher, getOrganismEnricher, getRetryCount, processInteractorType, processOrganism, setCvTermEnricher, setOrganismEnricher, setRetryCount

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

FullInteractorPoolUpdater

public FullInteractorPoolUpdater()

Constructor for FullInteractorPoolUpdater.

FullInteractorPoolUpdater

public FullInteractorPoolUpdater(InteractorFetcher<InteractorPool> fetcher)

Constructor for FullInteractorPoolUpdater.

Parameters:

fetcher - a InteractorFetcher object.

Method Detail

getInteractorMemberEnricher

public CompositeInteractorEnricher getInteractorMemberEnricher()

getInteractorMemberEnricher.

Returns:

a CompositeInteractorEnricher object.

setInteractorEnricher

public void setInteractorEnricher(CompositeInteractorEnricher interactorEnricher)

Setter for the field interactorEnricher.

Parameters:

interactorEnricher - a CompositeInteractorEnricher object.

getInteractorComparator

public Comparator<Interactor> getInteractorComparator()

Getter for the field interactorComparator.

Returns:

a Comparator object.

setInteractorComparator

public void setInteractorComparator(Comparator<Interactor> interactorComparator)

Setter for the field interactorComparator.

Parameters:

interactorComparator - a Comparator object.

isFullEnrichment

protected boolean isFullEnrichment()

isFullEnrichment.

Overrides:

isFullEnrichment in class FullInteractorBaseUpdater<InteractorPool>

Returns:

a boolean.

processOtherProperties

protected void processOtherProperties(InteractorPool poolToEnrich,
                                      InteractorPool fetched)
                               throws EnricherException

processOtherProperties.

Overrides:

processOtherProperties in class AbstractInteractorEnricher<InteractorPool>

Parameters:

poolToEnrich - a T object.

fetched - a T object.

Throws:

EnricherException - if any.

processMembers

protected void processMembers(InteractorPool poolToEnrich,
                              InteractorPool fetched)
                       throws EnricherException

processMembers.

Parameters:

poolToEnrich - a InteractorPool object.

fetched - a InteractorPool object.

Throws:

EnricherException - if any.