Package psidev.psi.mi.jami.enricher.impl.full

Class FullPublicationEnricher

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Publication>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationEnricher

psidev.psi.mi.jami.enricher.impl.full.FullPublicationEnricher

All Implemented Interfaces:

MIEnricher<Publication>, PublicationEnricher

Direct Known Subclasses:

FullPublicationUpdater, ImexPublicationAssigner, ImexPublicationRegister, ImexPublicationUpdater

public class FullPublicationEnricher
extends MinimalPublicationEnricher

Provides full enrichment of Publication. - enrich minimal properties as described in MinimalPublicationEnricher - enrich publication title. It will only enrich the title if it is not already set in the publication to enrich. It will not override any existing publication title - enrich publication journal. It will only enrich the journal if it is not already set in the publication to enrich. It will not override any existing journal - enrich xrefs (imex, etc.) of a publication. It will use DefaultXrefComparator to compare identifiers and add missing xrefs without removing any existing xrefs. - enrich annotations of a publication. It will use DefaultAnnotationComparator to compare annotations and add missing annotations without removing any existing annotations.

Since:

31/07/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
FullPublicationEnricher(PublicationFetcher fetcher)	Constructor for FullPublicationEnricher.

Method Summary

Modifier and Type	Method	Description
protected void	processAnnotations(Publication publicationToEnrich, Publication fetched)	processAnnotations.
protected void	processCurationDepth(Publication publicationToEnrich, Publication fetched)	processCurationDepth.
protected void	processJournal(Publication publicationToEnrich, Publication fetched)	processJournal.
protected void	processOtherProperties(Publication publicationToEnrich, Publication fetched)	processOtherProperties.
protected void	processPublicationTitle(Publication publicationToEnrich, Publication fetched)	processPublicationTitle.
protected void	processReleasedDate(Publication publicationToEnrich, Publication fetched)	processReleasedDate.
protected void	processXrefs(Publication publicationToEnrich, Publication fetched)	processXrefs.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationEnricher

enrich, find, getPublicationEnricherListener, getPublicationFetcher, getRetryCount, onEnrichedVersionNotFound, processAuthors, processIdentifiers, processPublication, processPublicationDate, setPublicationEnricherListener, setRetryCount

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

FullPublicationEnricher

public FullPublicationEnricher(PublicationFetcher fetcher)

Constructor for FullPublicationEnricher.

Parameters:

fetcher - a PublicationFetcher object.

Method Detail

processOtherProperties

protected void processOtherProperties(Publication publicationToEnrich,
                                      Publication fetched)
                               throws EnricherException

processOtherProperties.

The strategy for the enrichment of the publication. This methods can be overwritten to change the behaviour of the enrichment.

Overrides:

processOtherProperties in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processCurationDepth

protected void processCurationDepth(Publication publicationToEnrich,
                                    Publication fetched)
                             throws EnricherException

processCurationDepth.

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processReleasedDate

protected void processReleasedDate(Publication publicationToEnrich,
                                   Publication fetched)
                            throws EnricherException

processReleasedDate.

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processXrefs

protected void processXrefs(Publication publicationToEnrich,
                            Publication fetched)
                     throws EnricherException

processXrefs.

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processAnnotations

protected void processAnnotations(Publication publicationToEnrich,
                                  Publication fetched)
                           throws EnricherException

processAnnotations.

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processJournal

protected void processJournal(Publication publicationToEnrich,
                              Publication fetched)
                       throws EnricherException

processJournal.

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processPublicationTitle

protected void processPublicationTitle(Publication publicationToEnrich,
                                       Publication fetched)
                                throws EnricherException

processPublicationTitle.

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.