Package psidev.psi.mi.jami.imex

Class ImexPublicationAssigner

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Publication>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationEnricher

psidev.psi.mi.jami.enricher.impl.full.FullPublicationEnricher

psidev.psi.mi.jami.imex.ImexPublicationAssigner

All Implemented Interfaces:

MIEnricher<Publication>, PublicationEnricher

public class ImexPublicationAssigner
extends FullPublicationEnricher

This enricher will update a publication having IMEx id and synchronize it with IMEx central

Since:

29/10/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
ImexPublicationAssigner(ImexCentralClient fetcher)	Constructor for ImexPublicationAssigner.

Method Summary

Modifier and Type	Method	Description
ImexPublication	find(Publication publicationToEnrich)	find.
ImexAssigner	getImexAssigner()	Getter for the field imexAssigner.
ImexCentralPublicationRegister	getPublicationRegister()	Getter for the field publicationRegister.
ImexPublicationUpdater	getPublicationUpdater()	Getter for the field publicationUpdater.
protected boolean	isEntitledToAssignImexId(Publication publicationToEnrich, ImexPublication imexPublication)	isEntitledToAssignImexId.
protected void	processAnnotations(Publication publicationToEnrich, Publication fetched)	processAnnotations.
protected void	processAuthors(Publication publicationToEnrich, Publication fetched)	processAuthors.
protected void	processCurationDepth(Publication publicationToEnrich, Publication fetched)	processCurationDepth.
protected void	processIdentifiers(Publication publicationToEnrich, Publication fetched)	processIdentifiers.
protected void	processJournal(Publication publicationToEnrich, Publication fetched)	processJournal.
protected void	processPublicationDate(Publication publicationToEnrich, Publication fetched)	processPublicationDate.
protected void	processPublicationTitle(Publication publicationToEnrich, Publication fetched)	processPublicationTitle.
protected void	processReleasedDate(Publication publicationToEnrich, Publication fetched)	processReleasedDate.
protected void	processXrefs(Publication publicationToEnrich, Publication fetched)	processXrefs.
void	setImexAssigner(ImexAssigner imexAssigner)	Setter for the field imexAssigner.
void	setPublicationRegister(ImexCentralPublicationRegister publicationRegister)	Setter for the field publicationRegister.
void	setPublicationUpdater(ImexPublicationUpdater publicationUpdater)	Setter for the field publicationUpdater.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.full.FullPublicationEnricher

processOtherProperties

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationEnricher

enrich, getPublicationEnricherListener, getPublicationFetcher, getRetryCount, onEnrichedVersionNotFound, processPublication, setPublicationEnricherListener, setRetryCount

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

ImexPublicationAssigner

public ImexPublicationAssigner(ImexCentralClient fetcher)

Constructor for ImexPublicationAssigner.

Parameters:

fetcher - a ImexCentralClient object.

Method Detail

processCurationDepth

protected void processCurationDepth(Publication publicationToEnrich,
                                    Publication fetched)

processCurationDepth.

Overrides:

processCurationDepth in class FullPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processReleasedDate

protected void processReleasedDate(Publication publicationToEnrich,
                                   Publication fetched)

processReleasedDate.

Overrides:

processReleasedDate in class FullPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processXrefs

protected void processXrefs(Publication publicationToEnrich,
                            Publication fetched)

processXrefs.

Overrides:

processXrefs in class FullPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processAnnotations

protected void processAnnotations(Publication publicationToEnrich,
                                  Publication fetched)

processAnnotations.

Overrides:

processAnnotations in class FullPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processJournal

protected void processJournal(Publication publicationToEnrich,
                              Publication fetched)

processJournal.

Overrides:

processJournal in class FullPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processPublicationTitle

protected void processPublicationTitle(Publication publicationToEnrich,
                                       Publication fetched)

processPublicationTitle.

Overrides:

processPublicationTitle in class FullPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processPublicationDate

protected void processPublicationDate(Publication publicationToEnrich,
                                      Publication fetched)

processPublicationDate.

Overrides:

processPublicationDate in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processAuthors

protected void processAuthors(Publication publicationToEnrich,
                              Publication fetched)

processAuthors.

Overrides:

processAuthors in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

processIdentifiers

protected void processIdentifiers(Publication publicationToEnrich,
                                  Publication fetched)

processIdentifiers.

Overrides:

processIdentifiers in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

find

public ImexPublication find(Publication publicationToEnrich)
                     throws EnricherException

find.

Overrides:

find in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a T object.

Returns:

a T object.

Throws:

EnricherException - if any.

isEntitledToAssignImexId

protected boolean isEntitledToAssignImexId(Publication publicationToEnrich,
                                           ImexPublication imexPublication)
                                    throws EnricherException

isEntitledToAssignImexId.

Parameters:

publicationToEnrich - a Publication object.

imexPublication - a ImexPublication object.

Returns:

a boolean.

Throws:

EnricherException - if any.

getImexAssigner

public ImexAssigner getImexAssigner()

Getter for the field imexAssigner.

Returns:

a ImexAssigner object.

setImexAssigner

public void setImexAssigner(ImexAssigner imexAssigner)

Setter for the field imexAssigner.

Parameters:

imexAssigner - a ImexAssigner object.

getPublicationRegister

public ImexCentralPublicationRegister getPublicationRegister()

Getter for the field publicationRegister.

Returns:

a ImexCentralPublicationRegister object.

setPublicationRegister

public void setPublicationRegister(ImexCentralPublicationRegister publicationRegister)

Setter for the field publicationRegister.

Parameters:

publicationRegister - a ImexCentralPublicationRegister object.

getPublicationUpdater

public ImexPublicationUpdater getPublicationUpdater()

Getter for the field publicationUpdater.

Returns:

a ImexPublicationUpdater object.

setPublicationUpdater

public void setPublicationUpdater(ImexPublicationUpdater publicationUpdater)

Setter for the field publicationUpdater.

Parameters:

publicationUpdater - a ImexPublicationUpdater object.