Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalOntologyTermUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<OntologyTerm>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalOntologyTermEnricher

psidev.psi.mi.jami.enricher.impl.minimal.MinimalOntologyTermUpdater

All Implemented Interfaces:

CvTermEnricher<OntologyTerm>, MIEnricher<OntologyTerm>

Direct Known Subclasses:

FullOntologyTermUpdater

public class MinimalOntologyTermUpdater
extends MinimalOntologyTermEnricher

Provides minimal update of ontologYTerm. - update minimal properties of Cv Term. See description in MinimalCvTermUpdater - update children of a term. It will use DefaultCvTermComparator to compare children and add missing children and remove children that are not in fetched ontology term. It will enrich all the children of the ontologyTerm It will ignore all other properties of an ontologyTerm

Since:

29/01/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Modifier	Constructor	Description
	MinimalOntologyTermUpdater(OntologyTermFetcher cvTermFetcher)	Constructor for MinimalOntologyTermUpdater.
protected	MinimalOntologyTermUpdater(MinimalCvTermEnricher<OntologyTerm> cvEnricher)	Constructor for MinimalOntologyTermUpdater.

Method Summary

Modifier and Type	Method	Description
protected void	processChildren(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	processChildren.
protected void	processDefinition(OntologyTerm cvTermToEnrich, OntologyTerm cvTermFetched)	processDefinition.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalOntologyTermEnricher

enrich, enrich, enrichChild, enrichRelatedTerms, find, getCvEnricher, getCvTermEnricherListener, getCvTermFetcher, mergeOntologyTerms, onEnrichedVersionNotFound, processOntologyTerm, setCvTermEnricherListener

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich

Constructor Detail

MinimalOntologyTermUpdater

public MinimalOntologyTermUpdater(OntologyTermFetcher cvTermFetcher)

Constructor for MinimalOntologyTermUpdater.

Parameters:

cvTermFetcher - a OntologyTermFetcher object.

MinimalOntologyTermUpdater

protected MinimalOntologyTermUpdater(MinimalCvTermEnricher<OntologyTerm> cvEnricher)

Constructor for MinimalOntologyTermUpdater.

Parameters:

cvEnricher - a MinimalCvTermEnricher object.

Method Detail

processChildren

protected void processChildren(OntologyTerm cvTermToEnrich,
                               OntologyTerm cvTermFetched)
                        throws EnricherException

processChildren.

Overrides:

processChildren in class MinimalOntologyTermEnricher

Parameters:

cvTermToEnrich - a OntologyTerm object.

cvTermFetched - a OntologyTerm object.

Throws:

EnricherException - if any.

processDefinition

protected void processDefinition(OntologyTerm cvTermToEnrich,
                                 OntologyTerm cvTermFetched)
                          throws EnricherException

processDefinition.

Overrides:

processDefinition in class MinimalOntologyTermEnricher

Parameters:

cvTermToEnrich - a OntologyTerm object.

cvTermFetched - a OntologyTerm object.

Throws:

EnricherException - if any.