Package psidev.psi.mi.jami.enricher.impl.minimal

Class MinimalPublicationUpdater

java.lang.Object

psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher<Publication>

psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationEnricher

psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationUpdater

All Implemented Interfaces:

MIEnricher<Publication>, PublicationEnricher

public class MinimalPublicationUpdater
extends MinimalPublicationEnricher

Provides minimal update of Publication. - enrich source of a publication if the sourceEnricher is not null. If the source of the publication to enrich is different from the source of the fetched publication (see DefaultCvTermComparator), it will override the source with the source of the fetched publication - enrich identifiers (pubmed, doi, etc.) of a publication. It will use DefaultXrefComparator to compare identifiers and add missing identifiers. It will also remove identifiers that are not in the fetched publication - enrich authors of a publication. It will add all missing authors. It will also remove authors that are not in the fetched publication - enrich publication date. If the publication date of the publication to enrich is different from the publication date of the fetched publication, it will override the publication date with the publication date of the fetched publication It will ignore all other properties of a publication

Since:

01/08/13

Author:

Gabriel Aldam (galdam@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
MinimalPublicationUpdater(PublicationFetcher fetcher)	Constructor for MinimalPublicationUpdater.

Method Summary

Modifier and Type	Method	Description
protected void	processAuthors(Publication publicationToEnrich, Publication fetched)	processAuthors.
protected void	processIdentifiers(Publication publicationToEnrich, Publication fetched)	processIdentifiers.
protected void	processPublicationDate(Publication publicationToEnrich, Publication fetched)	processPublicationDate.

Methods inherited from class psidev.psi.mi.jami.enricher.impl.minimal.MinimalPublicationEnricher

enrich, find, getPublicationEnricherListener, getPublicationFetcher, getRetryCount, onEnrichedVersionNotFound, processOtherProperties, processPublication, setPublicationEnricherListener, setRetryCount

Methods inherited from class psidev.psi.mi.jami.enricher.impl.AbstractMIEnricher

enrich, enrich

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface psidev.psi.mi.jami.enricher.MIEnricher

enrich, enrich

Constructor Detail

MinimalPublicationUpdater

public MinimalPublicationUpdater(PublicationFetcher fetcher)

Constructor for MinimalPublicationUpdater.

Parameters:

fetcher - a PublicationFetcher object.

Method Detail

processPublicationDate

protected void processPublicationDate(Publication publicationToEnrich,
                                      Publication fetched)
                               throws EnricherException

processPublicationDate.

Overrides:

processPublicationDate in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processIdentifiers

protected void processIdentifiers(Publication publicationToEnrich,
                                  Publication fetched)
                           throws EnricherException

processIdentifiers.

Overrides:

processIdentifiers in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.

processAuthors

protected void processAuthors(Publication publicationToEnrich,
                              Publication fetched)
                       throws EnricherException

processAuthors.

Overrides:

processAuthors in class MinimalPublicationEnricher

Parameters:

publicationToEnrich - a Publication object.

fetched - a Publication object.

Throws:

EnricherException - if any.