Package psidev.psi.mi.jami.factory

Interface BinaryInteractionFactory

    • Method Detail

      • createBasicBinaryInteractionFrom

        BinaryInteraction createBasicBinaryInteractionFrom​(Interaction interaction,
                                                   Participant p1,
                                                   Participant p2,
                                                   CvTerm expansionMethod)
        Create a new BinaryInteraction object from an Interaction parent and two participants
        Parameters:
        interaction - : the original interaction
        p1 - : the first participant
        p2 - : the second participant
        expansionMethod - a CvTerm object.
        Returns:
        the new BinaryInteraction object

      • createBinaryInteractionEvidenceFrom

        BinaryInteractionEvidence createBinaryInteractionEvidenceFrom​(InteractionEvidence interaction,
                                                              ParticipantEvidence p1,
                                                              ParticipantEvidence p2,
                                                              CvTerm expansionMethod)
        Create a new BinaryInteractionEvidence object from an InteractionEvidence parent and two participants evidences
        Parameters:
        interaction - : the original interaction
        p1 - : the first participant
        p2 - : the second participant
        expansionMethod - : the expansion method
        Returns:
        the new BinaryInteractionEvidence object

      • createModelledBinaryInteractionFrom

        ModelledBinaryInteraction createModelledBinaryInteractionFrom​(ModelledInteraction interaction,
                                                              ModelledParticipant p1,
                                                              ModelledParticipant p2,
                                                              CvTerm expansionMethod)
        Create a new ModelledBinaryInteraction object from a ModelledInteraction parent and two modelled participants
        Parameters:
        interaction - : the original interaction
        p1 - : the first participant
        p2 - : the second participant
        expansionMethod - : the expansion method
        Returns:
        the new ModelledBinaryInteraction object

      • createSelfBinaryInteractionFrom

        BinaryInteraction createSelfBinaryInteractionFrom​(Interaction interaction)
        Create a binary interaction representing a self interaction
        Parameters:
        interaction - : the original interaction
        Returns:
        the resulting self binary interaction

      • createSelfBinaryInteractionEvidenceFrom

        BinaryInteractionEvidence createSelfBinaryInteractionEvidenceFrom​(InteractionEvidence interaction)
        Creates a BinaryInteractionEvidence representing a self interaction
        Parameters:
        interaction - : the original interaction
        Returns:
        the resulting self binary interaction

      • createSelfModelledBinaryInteractionFrom

        ModelledBinaryInteraction createSelfModelledBinaryInteractionFrom​(ModelledInteraction interaction)
        Creates a ModelledInteraction representing a self interaction
        Parameters:
        interaction - : the original interaction
        Returns:
        the resulting self binary interaction

      • createBinaryInteractionWrapperFrom

        BinaryInteraction createBinaryInteractionWrapperFrom​(Interaction interaction)
        Creates a BinaryInteraction that wraps the given interaction
        Parameters:
        interaction - : the original interaction
        Returns:
        the resulting binary interaction wrapper

      • createBinaryInteractionEvidenceWrapperFrom

        BinaryInteractionEvidence createBinaryInteractionEvidenceWrapperFrom​(InteractionEvidence interaction)
        Creates a BinaryInteractionEvidence that wraps the given interaction
        Parameters:
        interaction - : the original interaction
        Returns:
        the resulting binary interaction wrapper

      • createModelledBinaryInteractionWrapperFrom

        ModelledBinaryInteraction createModelledBinaryInteractionWrapperFrom​(ModelledInteraction interaction)
        Creates a ModelledBinaryInteraction that wraps the given interaction
        Parameters:
        interaction - : the original interaction
        Returns:
        the resulting binary interaction wrapper

      • instantiateNewBinaryInteraction

        BinaryInteraction instantiateNewBinaryInteraction()
        Instantiate a new BinaryInteraction
        Returns:
        the binary interaction instance

      • instantiateNewBinaryInteractionEvidence

        BinaryInteractionEvidence instantiateNewBinaryInteractionEvidence()
        Instantiate a new BinaryInteraction evidence
        Returns:
        the binary interaction instance

      • instantiateNewModelledBinaryInteraction

        ModelledBinaryInteraction instantiateNewModelledBinaryInteraction()
        Instantiate a new modelled binary interaction
        Returns:
        the binary interaction instance