Package psidev.psi.mi.jami.json.elements

Class SimpleJsonFeatureEvidenceWriter

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonFeatureWriter<FeatureEvidence>

psidev.psi.mi.jami.json.elements.SimpleJsonFeatureEvidenceWriter

All Implemented Interfaces:

JsonElementWriter<FeatureEvidence>

public class SimpleJsonFeatureEvidenceWriter
extends SimpleJsonFeatureWriter<FeatureEvidence>

Json writer for modelled features

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonFeatureEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonFeatureEvidenceWriter.
SimpleJsonFeatureEvidenceWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator, OntologyTermFetcher fetcher)	Constructor for SimpleJsonFeatureEvidenceWriter.

Method Summary

Modifier and Type	Method	Description
JsonElementWriter<Parameter>	getParameterWriter()	Getter for the field parameterWriter.
void	setParameterWriter(JsonElementWriter<Parameter> parameterWriter)	Setter for the field parameterWriter.
protected void	writeOtherProperties(FeatureEvidence object)	writeOtherProperties.

Methods inherited from class psidev.psi.mi.jami.json.elements.SimpleJsonFeatureWriter

getCvWriter, getIdentifierWriter, getIdGenerator, getRangeWriter, getWriter, recognizeFeatureCategory, setCvWriter, setIdentifierWriter, setIdGenerator, setRangeWriter, write

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonFeatureEvidenceWriter

public SimpleJsonFeatureEvidenceWriter(Writer writer,
                                       Map<Feature,Integer> processedFeatures,
                                       Map<String,String> processedInteractors,
                                       Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonFeatureEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonFeatureEvidenceWriter

public SimpleJsonFeatureEvidenceWriter(Writer writer,
                                       Map<Feature,Integer> processedFeatures,
                                       Map<String,String> processedInteractors,
                                       Map<Entity,Integer> processedParticipants,
                                       IncrementalIdGenerator idGenerator,
                                       OntologyTermFetcher fetcher)

Constructor for SimpleJsonFeatureEvidenceWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

fetcher - a OntologyTermFetcher object.

Method Detail

writeOtherProperties

protected void writeOtherProperties(FeatureEvidence object)
                             throws IOException

writeOtherProperties.

Overrides:

writeOtherProperties in class SimpleJsonFeatureWriter<FeatureEvidence>

Parameters:

object - a F object.

Throws:

IOException - if any.

getParameterWriter

public JsonElementWriter<Parameter> getParameterWriter()

Getter for the field parameterWriter.

Returns:

a JsonElementWriter object.

setParameterWriter

public void setParameterWriter(JsonElementWriter<Parameter> parameterWriter)

Setter for the field parameterWriter.

Parameters:

parameterWriter - a JsonElementWriter object.