Package psidev.psi.mi.jami.json.elements

Class SimpleJsonFeatureWriter<F extends Feature>

java.lang.Object

psidev.psi.mi.jami.json.elements.SimpleJsonFeatureWriter<F>

All Implemented Interfaces:

JsonElementWriter<F>

Direct Known Subclasses:

SimpleJsonFeatureEvidenceWriter, SimpleJsonModelledFeatureWriter

public class SimpleJsonFeatureWriter<F extends Feature>
extends Object
implements JsonElementWriter<F>

Json writer for features

Since:

18/07/14

Version:

$Id$

Author:

Marine Dumousseau (marine@ebi.ac.uk)

Constructor Summary

Constructors

Constructor	Description
SimpleJsonFeatureWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants)	Constructor for SimpleJsonFeatureWriter.
SimpleJsonFeatureWriter(Writer writer, Map<Feature,Integer> processedFeatures, Map<String,String> processedInteractors, Map<Entity,Integer> processedParticipants, IncrementalIdGenerator idGenerator, OntologyTermFetcher fetcher)	Constructor for SimpleJsonFeatureWriter.

Method Summary

Modifier and Type	Method	Description
JsonElementWriter<CvTerm>	getCvWriter()	Getter for the field cvWriter.
JsonElementWriter<Xref>	getIdentifierWriter()	Getter for the field identifierWriter.
IncrementalIdGenerator	getIdGenerator()	Getter for the field idGenerator.
JsonRangeWriter	getRangeWriter()	Getter for the field rangeWriter.
protected Writer	getWriter()	Getter for the field writer.
protected String	recognizeFeatureCategory(F feature)	recognizeFeatureCategory.
void	setCvWriter(JsonElementWriter<CvTerm> cvWriter)	Setter for the field cvWriter.
void	setIdentifierWriter(JsonElementWriter<Xref> identifierWriter)	Setter for the field identifierWriter.
void	setIdGenerator(IncrementalIdGenerator idGenerator)	Setter for the field idGenerator.
void	setRangeWriter(JsonRangeWriter rangeWriter)	Setter for the field rangeWriter.
void	write(F object)	write.
protected void	writeOtherProperties(F object)	writeOtherProperties.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SimpleJsonFeatureWriter

public SimpleJsonFeatureWriter(Writer writer,
                               Map<Feature,Integer> processedFeatures,
                               Map<String,String> processedInteractors,
                               Map<Entity,Integer> processedParticipants)

Constructor for SimpleJsonFeatureWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

SimpleJsonFeatureWriter

public SimpleJsonFeatureWriter(Writer writer,
                               Map<Feature,Integer> processedFeatures,
                               Map<String,String> processedInteractors,
                               Map<Entity,Integer> processedParticipants,
                               IncrementalIdGenerator idGenerator,
                               OntologyTermFetcher fetcher)

Constructor for SimpleJsonFeatureWriter.

Parameters:

writer - a Writer object.

processedFeatures - a Map object.

processedInteractors - a Map object.

processedParticipants - a Map object.

idGenerator - a IncrementalIdGenerator object.

fetcher - a OntologyTermFetcher object.

Method Detail

write

public void write(F object)
           throws IOException

write.

Specified by:

write in interface JsonElementWriter<F extends Feature>

Parameters:

object - a F object.

Throws:

IOException - if any.

writeOtherProperties

protected void writeOtherProperties(F object)
                             throws IOException

writeOtherProperties.

Parameters:

object - a F object.

Throws:

IOException - if any.

getCvWriter

public JsonElementWriter<CvTerm> getCvWriter()

Getter for the field cvWriter.

Returns:

a JsonElementWriter object.

setCvWriter

public void setCvWriter(JsonElementWriter<CvTerm> cvWriter)

Setter for the field cvWriter.

Parameters:

cvWriter - a JsonElementWriter object.

getIdentifierWriter

public JsonElementWriter<Xref> getIdentifierWriter()

Getter for the field identifierWriter.

Returns:

a JsonElementWriter object.

setIdentifierWriter

public void setIdentifierWriter(JsonElementWriter<Xref> identifierWriter)

Setter for the field identifierWriter.

Parameters:

identifierWriter - a JsonElementWriter object.

getRangeWriter

public JsonRangeWriter getRangeWriter()

Getter for the field rangeWriter.

Returns:

a JsonRangeWriter object.

setRangeWriter

public void setRangeWriter(JsonRangeWriter rangeWriter)

Setter for the field rangeWriter.

Parameters:

rangeWriter - a JsonRangeWriter object.

getIdGenerator

public IncrementalIdGenerator getIdGenerator()

Getter for the field idGenerator.

Returns:

a IncrementalIdGenerator object.

setIdGenerator

public void setIdGenerator(IncrementalIdGenerator idGenerator)

Setter for the field idGenerator.

Parameters:

idGenerator - a IncrementalIdGenerator object.

getWriter

protected Writer getWriter()

Getter for the field writer.

Returns:

a Writer object.

recognizeFeatureCategory

protected String recognizeFeatureCategory(F feature)

recognizeFeatureCategory.

Parameters:

feature - a F object.

Returns:

a String object.